Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4216

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
1,127,694	+		GFF4214	0.83	+0.3
1,127,694	+		GFF4214	0.83	-0.8
1,127,694	+		GFF4214	0.83	-0.2
1,127,694	+		GFF4214	0.83	-0.9
1,127,694	+		GFF4214	0.83	+0.2
1,127,695	-		GFF4214	0.83	-0.9
1,127,695	-		GFF4214	0.83	+0.2
1,127,695	-		GFF4214	0.83	-0.5
1,127,695	-		GFF4214	0.83	-1.4
1,127,695	-		GFF4214	0.83	+0.3
1,127,695	-		GFF4214	0.83	+0.1
1,127,695	-		GFF4214	0.83	-0.0
1,127,703	+		GFF4214	0.83	-0.0
1,127,703	+		GFF4214	0.83	+0.5
1,127,703	+		GFF4214	0.83	+0.0
1,127,704	-		GFF4214	0.84	-0.2
1,127,704	-		GFF4214	0.84	+0.2
1,127,766	+		GFF4214	0.87	-0.4
1,127,766	+		GFF4214	0.87	-2.7
1,127,766	+		GFF4214	0.87	-0.7
1,127,767	-		GFF4214	0.87	-0.2
1,127,767	-		GFF4214	0.87	+0.2
1,128,066	+				-0.1
1,128,066	+				+0.1
1,128,066	+				+0.8
1,128,066	+				+0.4
1,128,066	+				-0.2
1,128,066	+				+0.8
1,128,066	+				+0.4
1,128,066	+				-0.6
1,128,067	-				+0.3
1,128,067	-				-0.1
1,128,067	-				-1.5
1,128,067	-				+0.3
1,128,067	-				-0.4
1,128,581	+				+0.8
1,128,581	+				+0.1
1,128,581	+				-0.1
1,128,581	+				-0.4
1,128,581	+				-0.2
1,128,581	+				+1.4
1,128,582	-				-0.5
1,128,582	-				-1.2
1,128,582	-				-0.4
1,128,582	-				-0.4
1,128,608	+				-0.2
1,128,608	+				-1.0
1,128,608	+				-1.4
1,128,609	-				-0.1
1,128,609	-				+0.8
1,128,609	-				-0.0
1,128,615	+				+0.1
1,128,615	+				+0.1
1,128,616	-				-0.3
1,128,637	+				-0.1
1,128,638	-				+0.3
1,128,638	-				+0.3
1,128,638	-				-1.2
1,128,638	-				-0.8
1,128,710	+		GFF4216	0.11	-0.1
1,128,710	+		GFF4216	0.11	-1.7
1,128,710	+		GFF4216	0.11	+0.8
1,128,710	+		GFF4216	0.11	-0.2
1,128,710	+		GFF4216	0.11	-0.0
1,128,710	+		GFF4216	0.11	-0.4
1,128,711	-		GFF4216	0.11	-0.5
1,128,711	-		GFF4216	0.11	-0.0
1,128,711	-		GFF4216	0.11	+0.3
1,128,711	-		GFF4216	0.11	-0.3
1,128,711	-		GFF4216	0.11	-0.7
1,128,738	-		GFF4216	0.15	-0.2
1,128,755	+		GFF4216	0.17	-1.0
1,128,755	+		GFF4216	0.17	-0.2
1,128,755	+		GFF4216	0.17	-0.1
1,128,756	-		GFF4216	0.17	+0.1
1,128,756	-		GFF4216	0.17	+0.0
1,128,756	-		GFF4216	0.17	-0.2
1,128,848	+		GFF4216	0.31	+0.2
1,128,848	+		GFF4216	0.31	-0.8
1,128,848	+		GFF4216	0.31	+0.1
1,128,848	+		GFF4216	0.31	-0.3
1,128,848	+		GFF4216	0.31	-0.3
1,128,848	+		GFF4216	0.31	-0.6
1,128,849	-		GFF4216	0.31	+0.8
1,128,849	-		GFF4216	0.31	-0.8
1,128,849	-		GFF4216	0.31	+0.1
1,129,190	+		GFF4216	0.81	-0.2
1,129,190	+		GFF4216	0.81	-0.7
1,129,190	+		GFF4216	0.81	+0.8
1,129,190	+		GFF4216	0.81	+0.4
1,129,191	-		GFF4216	0.82	-2.3
1,129,191	-		GFF4216	0.82	+0.3
1,129,191	-		GFF4216	0.82	+0.4
1,129,340	+				+0.1
1,129,341	-				+0.6
1,129,405	+				-0.3
1,129,406	-				+0.1
1,129,406	-				+0.0
1,129,419	+				+0.2
1,129,419	+				-1.7
1,129,419	+				-1.2
1,129,419	+				-0.9
1,129,419	+				-0.2
1,129,419	+				-0.8
1,129,419	+				-1.2
1,129,419	+				-0.2
1,129,419	+				-0.8
1,129,419	+				+1.6
1,129,419	+				-0.8
1,129,419	+				-0.5
1,129,419	+				+0.1
1,129,419	+				-0.8