Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4172

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
1,087,993	-		GFF4171	0.40	-1.2
1,088,208	+		GFF4171	0.61	+0.0
1,088,208	+		GFF4171	0.61	-0.3
1,088,208	+		GFF4171	0.61	-0.5
1,088,208	+		GFF4171	0.61	-0.1
1,088,209	-		GFF4171	0.61	-0.2
1,088,209	-		GFF4171	0.61	-0.2
1,088,209	-		GFF4171	0.61	-0.8
1,088,209	-		GFF4171	0.61	-0.4
1,088,209	-		GFF4171	0.61	-0.2
1,088,209	-		GFF4171	0.61	-0.6
1,088,209	-		GFF4171	0.61	-0.3
1,088,209	-		GFF4171	0.61	-0.7
1,088,322	+		GFF4171	0.72	-0.2
1,088,323	-		GFF4171	0.72	-0.8
1,088,460	+		GFF4171	0.85	-0.5
1,088,461	-		GFF4171	0.85	-0.2
1,088,461	-		GFF4171	0.85	-0.0
1,088,528	+				-0.4
1,088,528	+				+0.2
1,088,528	+				-0.5
1,088,576	+				+0.1
1,088,576	+				-0.9
1,088,576	+				+0.8
1,088,577	-				+0.2
1,088,610	+				-0.2
1,088,611	-				-0.8
1,088,611	-				-0.1
1,088,652	+				-0.1
1,088,652	+				-0.2
1,088,653	-				-0.7
1,088,653	-				-0.2
1,088,658	+				-0.4
1,088,666	-				-0.4
1,088,726	+				-0.2
1,088,726	+				+0.1
1,088,727	-				+0.3
1,088,875	+				-1.5
1,088,875	+				-0.5
1,088,896	+				-0.1
1,088,897	-				+0.2
1,088,897	-				-1.4
1,088,898	+				+1.2
1,088,898	+				-0.4
1,089,009	+				-0.2
1,089,009	-				-1.0
1,089,066	-				+0.1
1,089,066	-				-0.2
1,089,066	-				-0.2
1,089,137	+		GFF4172	0.16	-0.8
1,089,228	-		GFF4172	0.25	-0.1
1,089,245	+		GFF4172	0.27	+0.2
1,089,245	+		GFF4172	0.27	+0.1
1,089,246	-		GFF4172	0.27	-0.2
1,089,246	-		GFF4172	0.27	-0.5
1,089,290	+		GFF4172	0.32	+0.1
1,089,290	+		GFF4172	0.32	+0.4
1,089,290	+		GFF4172	0.32	+0.4
1,089,290	+		GFF4172	0.32	+0.6
1,089,290	+		GFF4172	0.32	+0.1
1,089,290	+		GFF4172	0.32	-0.1
1,089,291	-		GFF4172	0.32	+0.8
1,089,291	-		GFF4172	0.32	-1.1
1,089,291	-		GFF4172	0.32	-0.2
1,089,291	-		GFF4172	0.32	+0.4
1,089,322	+		GFF4172	0.35	+0.2
1,089,323	-		GFF4172	0.35	-0.7
1,089,323	-		GFF4172	0.35	-0.1
1,089,323	-		GFF4172	0.35	+0.2
1,089,387	-		GFF4172	0.42	-0.4
1,089,406	+		GFF4172	0.44	-0.4
1,089,406	+		GFF4172	0.44	+1.4
1,089,406	+		GFF4172	0.44	-0.1
1,089,406	+		GFF4172	0.44	-0.3
1,089,406	+		GFF4172	0.44	-0.8
1,089,406	+		GFF4172	0.44	-0.0
1,089,406	+		GFF4172	0.44	+0.2
1,089,406	+		GFF4172	0.44	-0.1
1,089,406	+		GFF4172	0.44	+0.1
1,089,406	+		GFF4172	0.44	+0.1
1,089,406	+		GFF4172	0.44	-0.0
1,089,407	-		GFF4172	0.44	-0.9
1,089,407	-		GFF4172	0.44	-0.3
1,089,407	-		GFF4172	0.44	+1.1
1,089,407	-		GFF4172	0.44	+0.6
1,089,407	-		GFF4172	0.44	-0.4
1,089,407	-		GFF4172	0.44	-0.9
1,089,407	-		GFF4172	0.44	+0.5
1,089,407	-		GFF4172	0.44	+0.1
1,089,511	+		GFF4172	0.55	+0.2
1,089,511	+		GFF4172	0.55	-0.4
1,089,527	+		GFF4172	0.57	+0.2
1,089,527	+		GFF4172	0.57	+0.3
1,089,553	-		GFF4172	0.60	-0.3
1,089,685	+		GFF4172	0.74	+0.2
1,089,685	+		GFF4172	0.74	-0.9
1,089,685	+		GFF4172	0.74	-0.4
1,089,725	+		GFF4172	0.78	+0.2
1,089,754	+		GFF4172	0.81	+0.5
1,089,778	+		GFF4172	0.84	+0.1
1,089,778	+		GFF4172	0.84	+0.1
1,089,778	+		GFF4172	0.84	+1.2
1,089,778	+		GFF4172	0.84	-0.0
1,089,778	+		GFF4172	0.84	+0.1
1,089,779	-		GFF4172	0.84	+0.3
1,089,795	+		GFF4172	0.85	-0.7
1,089,795	+		GFF4172	0.85	-0.9
1,089,795	+		GFF4172	0.85	-1.1
1,089,795	+		GFF4172	0.85	+0.2
1,089,795	+		GFF4172	0.85	-0.2
1,089,795	+		GFF4172	0.85	-1.0
1,089,795	+		GFF4172	0.85	-0.2
1,089,795	+		GFF4172	0.85	-0.2
1,089,795	+		GFF4172	0.85	-0.2
1,089,796	-		GFF4172	0.86	+0.3
1,089,796	-		GFF4172	0.86	-0.2
1,089,796	-		GFF4172	0.86	+0.1
1,089,853	+				+0.3
1,089,853	+				-0.3
1,089,854	-				-0.2
1,090,022	-		GFF4173	0.33	-0.7
1,090,063	+		GFF4173	0.48	-0.3
1,090,063	+		GFF4173	0.48	+0.1
1,090,064	-		GFF4173	0.48	-0.2
1,090,064	-		GFF4173	0.48	+0.2
1,090,064	-		GFF4173	0.48	-0.8
1,090,064	-		GFF4173	0.48	-0.3
1,090,154	+		GFF4173	0.81	-1.3
1,090,154	+		GFF4173	0.81	+0.5
1,090,154	+		GFF4173	0.81	+0.4
1,090,155	-		GFF4173	0.81	-0.2
1,090,155	-		GFF4173	0.81	+0.7
1,090,155	-		GFF4173	0.81	+0.4
1,090,155	-		GFF4173	0.81	-0.0
1,090,176	-		GFF4173	0.89	-1.8
1,090,177	+		GFF4173	0.89	-1.8
1,090,177	+		GFF4173	0.89	-0.2
1,090,177	+		GFF4173	0.89	-0.1
1,090,178	-		GFF4173	0.89	+0.5
1,090,178	-		GFF4173	0.89	-0.1
1,090,178	-		GFF4173	0.89	-0.9
1,090,178	-		GFF4173	0.89	+0.1
1,090,178	-		GFF4173	0.89	+1.4
1,090,483	+				-0.7
1,090,483	+				-1.2
1,090,483	+				+0.5
1,090,483	+				-0.6
1,090,552	+				-0.3
1,090,552	+				-0.1
1,090,552	+				+0.1
1,090,552	+				-0.1
1,090,552	+				-0.2
1,090,552	+				-0.8
1,090,553	-				+0.3
1,090,553	-				+0.9
1,090,553	-				-0.3
1,090,761	+		GFF4174	0.16	-0.2
1,090,854	+		GFF4174	0.21	+0.4