Experiment: Ying_all64 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4046 and GFF4047 are separated by 16 nucleotides GFF4047 and GFF4048 are separated by 83 nucleotides GFF4048 and GFF4049 overlap by 24 nucleotides GFF4049 and GFF4050 are separated by 12 nucleotides GFF4050 and GFF4051 are separated by 10 nucleotides
GFF4046 - hypothetical protein, at 967,170 to 967,757
GFF4046
GFF4047 - hypothetical protein, at 967,774 to 968,436
GFF4047
GFF4048 - hypothetical protein, at 968,520 to 968,633
GFF4048
GFF4049 - hypothetical protein, at 968,610 to 969,227
GFF4049
GFF4050 - hypothetical protein, at 969,240 to 969,977
GFF4050
GFF4051 - hypothetical protein, at 969,988 to 970,341
GFF4051
Position (kb) 968
969
970 Strain fitness (log2 ratio) -2
-1
0
1 at 967.665 kb on + strand, within GFF4046 at 967.665 kb on + strand, within GFF4046 at 967.666 kb on - strand, within GFF4046 at 967.666 kb on - strand, within GFF4046 at 967.666 kb on - strand, within GFF4046 at 967.871 kb on - strand, within GFF4047 at 967.966 kb on + strand, within GFF4047 at 967.966 kb on + strand, within GFF4047 at 967.967 kb on - strand, within GFF4047 at 967.971 kb on + strand, within GFF4047 at 967.972 kb on - strand, within GFF4047 at 967.972 kb on - strand, within GFF4047 at 967.972 kb on - strand, within GFF4047 at 968.059 kb on + strand, within GFF4047 at 968.060 kb on - strand, within GFF4047 at 968.060 kb on - strand, within GFF4047 at 968.101 kb on + strand, within GFF4047 at 968.101 kb on + strand, within GFF4047 at 968.101 kb on + strand, within GFF4047 at 968.102 kb on - strand, within GFF4047 at 968.155 kb on + strand, within GFF4047 at 968.155 kb on + strand, within GFF4047 at 968.155 kb on + strand, within GFF4047 at 968.155 kb on + strand, within GFF4047 at 968.156 kb on - strand, within GFF4047 at 968.156 kb on - strand, within GFF4047 at 968.156 kb on - strand, within GFF4047 at 968.156 kb on - strand, within GFF4047 at 968.218 kb on + strand, within GFF4047 at 968.218 kb on + strand, within GFF4047 at 968.219 kb on - strand, within GFF4047 at 968.219 kb on - strand, within GFF4047 at 968.451 kb on + strand at 968.471 kb on + strand at 968.471 kb on + strand at 968.471 kb on + strand at 968.471 kb on + strand at 968.471 kb on + strand at 968.471 kb on + strand at 968.471 kb on + strand at 968.472 kb on - strand at 968.472 kb on - strand at 968.621 kb on - strand at 968.757 kb on + strand, within GFF4049 at 968.757 kb on + strand, within GFF4049 at 968.757 kb on + strand, within GFF4049 at 968.758 kb on - strand, within GFF4049 at 968.958 kb on + strand, within GFF4049 at 968.958 kb on + strand, within GFF4049 at 968.958 kb on + strand, within GFF4049 at 968.959 kb on - strand, within GFF4049 at 968.959 kb on - strand, within GFF4049 at 968.959 kb on - strand, within GFF4049 at 969.267 kb on + strand at 969.267 kb on + strand at 969.267 kb on + strand at 969.268 kb on - strand at 969.268 kb on - strand at 969.330 kb on + strand, within GFF4050 at 969.330 kb on + strand, within GFF4050 at 969.330 kb on + strand, within GFF4050 at 969.331 kb on - strand, within GFF4050 at 969.331 kb on - strand, within GFF4050 at 969.331 kb on - strand, within GFF4050 at 969.861 kb on + strand, within GFF4050 at 969.861 kb on + strand, within GFF4050 at 969.861 kb on + strand, within GFF4050 at 969.861 kb on + strand, within GFF4050 at 969.861 kb on + strand, within GFF4050 at 969.862 kb on - strand, within GFF4050 at 969.862 kb on - strand, within GFF4050 at 969.862 kb on - strand, within GFF4050
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3 remove 967,665 + GFF4046 0.84 +0.0 967,665 + GFF4046 0.84 +0.8 967,666 - GFF4046 0.84 +0.1 967,666 - GFF4046 0.84 +1.1 967,666 - GFF4046 0.84 +0.1 967,871 - GFF4047 0.15 +0.1 967,966 + GFF4047 0.29 -0.1 967,966 + GFF4047 0.29 +0.6 967,967 - GFF4047 0.29 -0.4 967,971 + GFF4047 0.30 -1.3 967,972 - GFF4047 0.30 +0.2 967,972 - GFF4047 0.30 +0.3 967,972 - GFF4047 0.30 -1.5 968,059 + GFF4047 0.43 +0.1 968,060 - GFF4047 0.43 -0.0 968,060 - GFF4047 0.43 +0.2 968,101 + GFF4047 0.49 +0.2 968,101 + GFF4047 0.49 +1.6 968,101 + GFF4047 0.49 -0.8 968,102 - GFF4047 0.49 +0.6 968,155 + GFF4047 0.57 -0.2 968,155 + GFF4047 0.57 +0.2 968,155 + GFF4047 0.57 -0.2 968,155 + GFF4047 0.57 +0.6 968,156 - GFF4047 0.58 +0.0 968,156 - GFF4047 0.58 -0.4 968,156 - GFF4047 0.58 -1.5 968,156 - GFF4047 0.58 +0.8 968,218 + GFF4047 0.67 -0.1 968,218 + GFF4047 0.67 +0.2 968,219 - GFF4047 0.67 -0.8 968,219 - GFF4047 0.67 -0.0 968,451 + +1.1 968,471 + -1.6 968,471 + +0.1 968,471 + +0.3 968,471 + -0.2 968,471 + +0.0 968,471 + -0.5 968,471 + +0.3 968,472 - +0.3 968,472 - +1.0 968,621 - +0.1 968,757 + GFF4049 0.24 -1.8 968,757 + GFF4049 0.24 +0.1 968,757 + GFF4049 0.24 -0.5 968,758 - GFF4049 0.24 +0.1 968,958 + GFF4049 0.56 -0.1 968,958 + GFF4049 0.56 -0.6 968,958 + GFF4049 0.56 +0.3 968,959 - GFF4049 0.56 -0.2 968,959 - GFF4049 0.56 -0.1 968,959 - GFF4049 0.56 +0.2 969,267 + +0.1 969,267 + +0.0 969,267 + +0.4 969,268 - +0.0 969,268 - +0.1 969,330 + GFF4050 0.12 +0.5 969,330 + GFF4050 0.12 -0.1 969,330 + GFF4050 0.12 -0.7 969,331 - GFF4050 0.12 -0.4 969,331 - GFF4050 0.12 +0.3 969,331 - GFF4050 0.12 +1.5 969,861 + GFF4050 0.84 -0.1 969,861 + GFF4050 0.84 -0.2 969,861 + GFF4050 0.84 +0.3 969,861 + GFF4050 0.84 +0.4 969,861 + GFF4050 0.84 +0.8 969,862 - GFF4050 0.84 +0.4 969,862 - GFF4050 0.84 -0.8 969,862 - GFF4050 0.84 -0.2
Or see this region's nucleotide sequence