Experiment: Ying_all64 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3713 and GFF3714 overlap by 11 nucleotides GFF3714 and GFF3715 are separated by 4 nucleotides GFF3715 and GFF3716 are separated by 10 nucleotides
GFF3713 - Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4), at 606,544 to 607,020
GFF3713
GFF3714 - Carbon monoxide oxidation accessory protein CoxG, at 607,010 to 607,726
GFF3714
GFF3715 - Choline-sulfatase (EC 3.1.6.6), at 607,731 to 609,311
GFF3715
GFF3716 - Tricarboxylate transport protein TctC, at 609,322 to 610,305
GFF3716
Position (kb) 607
608
609
610 Strain fitness (log2 ratio) -1
0
1 at 607.139 kb on + strand, within GFF3714 at 607.139 kb on + strand, within GFF3714 at 607.140 kb on - strand, within GFF3714 at 607.140 kb on - strand, within GFF3714 at 607.140 kb on - strand, within GFF3714 at 607.724 kb on + strand at 607.724 kb on + strand at 607.724 kb on + strand at 607.876 kb on + strand at 608.200 kb on + strand, within GFF3715 at 608.650 kb on + strand, within GFF3715 at 608.651 kb on - strand, within GFF3715 at 608.651 kb on - strand, within GFF3715 at 608.651 kb on - strand, within GFF3715 at 608.662 kb on + strand, within GFF3715 at 608.851 kb on + strand, within GFF3715 at 608.852 kb on - strand, within GFF3715 at 608.852 kb on - strand, within GFF3715 at 608.852 kb on - strand, within GFF3715 at 609.539 kb on + strand, within GFF3716 at 609.744 kb on - strand, within GFF3716
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3 remove 607,139 + GFF3714 0.18 +0.8 607,139 + GFF3714 0.18 +1.5 607,140 - GFF3714 0.18 +0.5 607,140 - GFF3714 0.18 -0.2 607,140 - GFF3714 0.18 +0.3 607,724 + -1.2 607,724 + +0.3 607,724 + -1.1 607,876 + -1.2 608,200 + GFF3715 0.30 +0.2 608,650 + GFF3715 0.58 -0.4 608,651 - GFF3715 0.58 +0.4 608,651 - GFF3715 0.58 +0.2 608,651 - GFF3715 0.58 -0.3 608,662 + GFF3715 0.59 -0.1 608,851 + GFF3715 0.71 -0.6 608,852 - GFF3715 0.71 +0.6 608,852 - GFF3715 0.71 +0.6 608,852 - GFF3715 0.71 +0.2 609,539 + GFF3716 0.22 +0.0 609,744 - GFF3716 0.43 +0.2
Or see this region's nucleotide sequence