Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3518

Experiment: Ying_all64 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3516 and GFF3517 overlap by 4 nucleotidesGFF3517 and GFF3518 are separated by 28 nucleotidesGFF3518 and GFF3519 are separated by 93 nucleotides GFF3516 - Ankyrin, at 402,023 to 402,829 GFF3516 GFF3517 - RNA polymerase sigma-70 factor, at 402,826 to 403,401 GFF3517 GFF3518 - Putative outer membrane lipoprotein, at 403,430 to 404,269 GFF3518 GFF3519 - Transcriptional regulator, LysR family, at 404,363 to 405,295 GFF3519 Position (kb) 403 404 405Strain fitness (log2 ratio) -1 0 1at 402.798 kb on + strandat 403.319 kb on + strand, within GFF3517at 403.320 kb on - strand, within GFF3517at 403.332 kb on - strand, within GFF3517at 403.971 kb on + strand, within GFF3518at 404.080 kb on - strand, within GFF3518at 404.424 kb on + strandat 404.424 kb on + strandat 404.424 kb on + strandat 404.424 kb on + strandat 404.425 kb on - strandat 404.784 kb on + strand, within GFF3519at 404.884 kb on - strand, within GFF3519

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3
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402,798 + +0.0
403,319 + GFF3517 0.86 -1.0
403,320 - GFF3517 0.86 +0.1
403,332 - GFF3517 0.88 -0.1
403,971 + GFF3518 0.64 -0.7
404,080 - GFF3518 0.77 -0.5
404,424 + +0.1
404,424 + -0.2
404,424 + -0.0
404,424 + -0.2
404,425 - +0.3
404,784 + GFF3519 0.45 +0.3
404,884 - GFF3519 0.56 -0.4

Or see this region's nucleotide sequence