Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3489

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
367,892	-		GFF3487	0.45	+1.0
368,326	-				+0.8
368,371	-				+0.1
368,489	+		GFF3488	0.50	+0.3
368,633	-				-0.3
368,633	-				-0.5
368,633	-				-1.2
368,774	+		GFF3489	0.11	-0.2
368,825	-		GFF3489	0.26	-0.1
369,091	-				-0.7
369,091	-				-0.7
369,091	-				-0.4
369,091	-				+0.3
369,091	-				-0.5
369,091	-				+1.3
369,269	-				+0.2
369,287	+				+0.5
369,287	+				-0.0
369,288	-				+0.8
369,292	-				-0.2
369,292	-				+0.4
369,292	-				+0.4
369,819	+		GFF3491	0.22	+0.2
369,820	-		GFF3491	0.23	+0.1
369,820	-		GFF3491	0.23	-0.3
369,858	+		GFF3491	0.35	-0.2
369,865	-		GFF3491	0.37	-2.0
369,865	-		GFF3491	0.37	-1.3
369,912	+		GFF3491	0.52	-0.4
369,912	+		GFF3491	0.52	-0.4