Experiment: Ying_all64 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3462 and GFF3463 are separated by 157 nucleotides
GFF3462 - Acyl-CoA dehydrogenase (EC 1.3.8.7), at 342,386 to 344,167
GFF3462
GFF3463 - Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-), at 344,325 to 345,026
GFF3463
Position (kb) 344
345
346 Strain fitness (log2 ratio) -1
0
1
2
3 at 343.470 kb on + strand, within GFF3462 at 344.025 kb on + strand at 344.058 kb on - strand at 344.157 kb on + strand at 344.173 kb on - strand at 344.213 kb on + strand at 344.213 kb on + strand at 344.214 kb on - strand at 344.214 kb on - strand at 344.214 kb on - strand at 344.214 kb on - strand at 344.239 kb on - strand at 344.305 kb on + strand at 344.507 kb on + strand, within GFF3463 at 344.507 kb on + strand, within GFF3463 at 344.508 kb on - strand, within GFF3463 at 344.508 kb on - strand, within GFF3463 at 344.669 kb on + strand, within GFF3463 at 344.669 kb on + strand, within GFF3463 at 344.812 kb on - strand, within GFF3463 at 344.855 kb on + strand, within GFF3463 at 345.050 kb on + strand at 345.051 kb on - strand at 345.082 kb on - strand at 345.140 kb on + strand at 345.140 kb on + strand at 345.141 kb on - strand at 345.141 kb on - strand at 345.144 kb on - strand at 345.144 kb on - strand at 345.212 kb on + strand at 345.212 kb on + strand at 345.213 kb on - strand at 345.213 kb on - strand at 345.213 kb on - strand at 345.213 kb on - strand at 345.217 kb on - strand at 345.379 kb on + strand at 345.386 kb on + strand at 345.386 kb on + strand at 345.386 kb on + strand at 345.387 kb on - strand at 345.387 kb on - strand at 345.459 kb on - strand at 345.495 kb on + strand at 345.496 kb on - strand at 345.496 kb on - strand at 345.500 kb on - strand at 345.668 kb on + strand at 345.668 kb on + strand at 345.669 kb on - strand at 345.722 kb on + strand at 345.722 kb on + strand at 345.722 kb on + strand at 345.723 kb on - strand at 345.727 kb on - strand at 345.775 kb on + strand at 345.973 kb on - strand at 345.973 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3 remove 343,470 + GFF3462 0.61 +1.0 344,025 + +0.0 344,058 - -0.8 344,157 + +0.1 344,173 - +0.2 344,213 + +0.4 344,213 + -0.2 344,214 - +0.1 344,214 - +0.3 344,214 - +0.3 344,214 - -0.2 344,239 - -0.1 344,305 + +0.2 344,507 + GFF3463 0.26 +0.1 344,507 + GFF3463 0.26 -0.1 344,508 - GFF3463 0.26 -0.2 344,508 - GFF3463 0.26 +0.5 344,669 + GFF3463 0.49 -1.5 344,669 + GFF3463 0.49 -1.2 344,812 - GFF3463 0.69 +0.0 344,855 + GFF3463 0.75 -0.2 345,050 + +0.8 345,051 - -0.2 345,082 - +0.8 345,140 + -0.7 345,140 + -1.0 345,141 - +0.5 345,141 - -0.2 345,144 - -0.1 345,144 - -0.4 345,212 + -0.6 345,212 + -0.4 345,213 - +1.0 345,213 - +0.0 345,213 - -0.2 345,213 - -0.2 345,217 - -0.6 345,379 + +0.5 345,386 + +0.5 345,386 + +0.5 345,386 + -0.6 345,387 - +0.2 345,387 - -0.6 345,459 - -0.5 345,495 + +0.0 345,496 - -0.1 345,496 - -0.3 345,500 - +0.2 345,668 + +0.9 345,668 + +0.2 345,669 - +2.8 345,722 + +0.8 345,722 + -0.6 345,722 + +0.2 345,723 - -0.6 345,727 - -1.1 345,775 + +0.8 345,973 - +0.3 345,973 - -0.2
Or see this region's nucleotide sequence