Experiment: Ying_all64 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3399 and GFF3400 overlap by 1 nucleotides GFF3400 and GFF3401 are separated by 4 nucleotides GFF3401 and GFF3402 overlap by 4 nucleotides GFF3402 and GFF3403 overlap by 8 nucleotides
GFF3399 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 283,805 to 284,854
GFF3399
GFF3400 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 284,854 to 285,738
GFF3400
GFF3401 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 285,743 to 287,683
GFF3401
GFF3402 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 287,680 to 288,468
GFF3402
GFF3403 - Alpha-methylacyl-CoA racemase (EC 5.1.99.4), at 288,461 to 289,504
GFF3403
Position (kb) 285
286
287
288 Strain fitness (log2 ratio) -1
0
1
2 at 284.830 kb on + strand at 284.972 kb on + strand, within GFF3400 at 284.972 kb on + strand, within GFF3400 at 284.973 kb on - strand, within GFF3400 at 285.654 kb on - strand at 285.719 kb on + strand at 285.823 kb on - strand at 285.864 kb on + strand at 286.194 kb on + strand, within GFF3401 at 286.194 kb on + strand, within GFF3401 at 286.195 kb on - strand, within GFF3401 at 286.285 kb on - strand, within GFF3401 at 287.001 kb on + strand, within GFF3401 at 287.001 kb on + strand, within GFF3401 at 287.002 kb on - strand, within GFF3401 at 287.002 kb on - strand, within GFF3401 at 287.010 kb on + strand, within GFF3401 at 287.700 kb on - strand at 288.287 kb on + strand, within GFF3402
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3 remove 284,830 + +0.5 284,972 + GFF3400 0.13 +0.8 284,972 + GFF3400 0.13 +0.0 284,973 - GFF3400 0.13 +0.0 285,654 - +0.2 285,719 + -0.7 285,823 - +0.8 285,864 + -0.3 286,194 + GFF3401 0.23 +0.8 286,194 + GFF3401 0.23 -0.5 286,195 - GFF3401 0.23 +1.4 286,285 - GFF3401 0.28 +0.5 287,001 + GFF3401 0.65 +0.8 287,001 + GFF3401 0.65 +1.8 287,002 - GFF3401 0.65 +0.8 287,002 - GFF3401 0.65 -0.2 287,010 + GFF3401 0.65 -0.1 287,700 - -0.2 288,287 + GFF3402 0.77 +0.4
Or see this region's nucleotide sequence