Experiment: Ying_all64 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF339 and GFF340 are separated by 17 nucleotides
GFF339 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 3 to 812
GFF339
GFF340 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 830 to 2,452
GFF340
Position (kb) 0
1 Strain fitness (log2 ratio) -1
0
1
2 at 0.307 kb on + strand, within GFF339 at 0.307 kb on + strand, within GFF339 at 0.634 kb on + strand, within GFF339 at 0.635 kb on - strand, within GFF339 at 0.635 kb on - strand, within GFF339 at 0.635 kb on - strand, within GFF339 at 0.936 kb on + strand at 0.936 kb on + strand at 0.937 kb on - strand at 0.937 kb on - strand at 0.937 kb on - strand at 0.937 kb on - strand at 0.981 kb on + strand at 0.982 kb on - strand at 0.982 kb on - strand at 1.152 kb on + strand, within GFF340 at 1.152 kb on + strand, within GFF340 at 1.152 kb on + strand, within GFF340 at 1.153 kb on - strand, within GFF340 at 1.153 kb on - strand, within GFF340 at 1.153 kb on - strand, within GFF340 at 1.182 kb on + strand, within GFF340 at 1.192 kb on - strand, within GFF340 at 1.329 kb on + strand, within GFF340 at 1.329 kb on + strand, within GFF340 at 1.330 kb on - strand, within GFF340 at 1.330 kb on - strand, within GFF340 at 1.450 kb on - strand, within GFF340 at 1.497 kb on + strand, within GFF340 at 1.497 kb on + strand, within GFF340 at 1.497 kb on + strand, within GFF340 at 1.497 kb on + strand, within GFF340 at 1.498 kb on - strand, within GFF340 at 1.498 kb on - strand, within GFF340 at 1.500 kb on + strand, within GFF340 at 1.500 kb on + strand, within GFF340 at 1.651 kb on - strand, within GFF340 at 1.725 kb on + strand, within GFF340 at 1.726 kb on - strand, within GFF340 at 1.726 kb on - strand, within GFF340 at 1.797 kb on + strand, within GFF340 at 1.798 kb on - strand, within GFF340 at 1.798 kb on - strand, within GFF340
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3 remove 307 + GFF339 0.38 -0.3 307 + GFF339 0.38 +1.2 634 + GFF339 0.78 -0.5 635 - GFF339 0.78 -0.2 635 - GFF339 0.78 -0.2 635 - GFF339 0.78 -0.8 936 + +0.5 936 + -0.0 937 - -0.4 937 - +0.4 937 - -0.0 937 - -0.1 981 + -0.4 982 - +0.3 982 - -0.1 1,152 + GFF340 0.20 -0.1 1,152 + GFF340 0.20 -0.2 1,152 + GFF340 0.20 +0.7 1,153 - GFF340 0.20 -0.6 1,153 - GFF340 0.20 -1.1 1,153 - GFF340 0.20 +1.2 1,182 + GFF340 0.22 -0.1 1,192 - GFF340 0.22 -0.3 1,329 + GFF340 0.31 -0.3 1,329 + GFF340 0.31 +0.0 1,330 - GFF340 0.31 -0.5 1,330 - GFF340 0.31 +0.5 1,450 - GFF340 0.38 +0.2 1,497 + GFF340 0.41 +0.1 1,497 + GFF340 0.41 -0.8 1,497 + GFF340 0.41 -0.0 1,497 + GFF340 0.41 -0.7 1,498 - GFF340 0.41 +0.9 1,498 - GFF340 0.41 +0.7 1,500 + GFF340 0.41 +0.3 1,500 + GFF340 0.41 -0.2 1,651 - GFF340 0.51 +0.6 1,725 + GFF340 0.55 -0.6 1,726 - GFF340 0.55 +0.6 1,726 - GFF340 0.55 -0.0 1,797 + GFF340 0.60 +2.7 1,798 - GFF340 0.60 +0.9 1,798 - GFF340 0.60 -0.3
Or see this region's nucleotide sequence