Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3123

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
745	+				+0.5
745	+				+0.7
745	+				-0.2
746	-				-0.1
794	+				+0.4
795	-				+0.5
913	-				+0.8
913	-				+0.0
1,073	+				+0.3
1,073	+				-1.4
1,073	+				-0.5
1,073	+				+0.2
1,074	-				-0.2
1,074	-				+0.1
1,074	-				+0.2
1,277	+				+0.5
1,277	+				-0.5
1,278	-				-0.2
1,323	-				-0.4
1,405	+				+0.1
1,405	+				+0.1
1,467	+				-1.3
1,468	+				-0.2
1,468	-				-0.5
1,539	+		GFF3123	0.15	+0.8
1,539	+		GFF3123	0.15	+1.5
1,539	+		GFF3123	0.15	-0.0
1,540	-		GFF3123	0.16	-0.1
1,567	-		GFF3123	0.23	+0.4
1,825	-				+0.3
1,825	-				+0.2
1,825	-				-0.0
1,825	-				+0.8
1,825	-				-0.7
2,050	+		GFF3124	0.21	-0.5
2,050	+		GFF3124	0.21	+0.2
2,051	-		GFF3124	0.21	+0.8
2,051	-		GFF3124	0.21	+0.4
2,051	-		GFF3124	0.21	-0.3
2,229	+		GFF3124	0.78	-0.0
2,229	+		GFF3124	0.78	-0.1
2,230	-		GFF3124	0.78	+0.9
2,232	+		GFF3124	0.79	+1.1
2,575	+				+0.5
2,576	-				-0.5
2,576	-				-0.0
2,576	-				-0.5
2,624	+				+0.7