Experiment: Ying_all64 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2957 and GFF2958 are separated by 28 nucleotides GFF2958 and GFF2959 overlap by 8 nucleotides
GFF2957 - TRAP transporter solute receptor, unknown substrate 5, at 36,118 to 37,131
GFF2957
GFF2958 - TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 5, at 37,160 to 37,699
GFF2958
GFF2959 - TRAP-type C4-dicarboxylate transport system, large permease component, at 37,692 to 38,993
GFF2959
Position (kb) 37
38 Strain fitness (log2 ratio) -2
-1
0
1 at 36.160 kb on + strand at 36.160 kb on + strand at 36.161 kb on - strand at 36.238 kb on + strand, within GFF2957 at 36.238 kb on + strand, within GFF2957 at 36.238 kb on + strand, within GFF2957 at 36.239 kb on - strand, within GFF2957 at 36.239 kb on - strand, within GFF2957 at 36.245 kb on - strand, within GFF2957 at 36.245 kb on - strand, within GFF2957 at 36.245 kb on - strand, within GFF2957 at 36.245 kb on - strand, within GFF2957 at 36.245 kb on - strand, within GFF2957 at 36.245 kb on - strand, within GFF2957 at 36.538 kb on + strand, within GFF2957 at 36.539 kb on - strand, within GFF2957 at 36.571 kb on + strand, within GFF2957 at 36.571 kb on + strand, within GFF2957 at 36.571 kb on + strand, within GFF2957 at 36.571 kb on + strand, within GFF2957 at 36.572 kb on - strand, within GFF2957 at 36.572 kb on - strand, within GFF2957 at 36.572 kb on - strand, within GFF2957 at 36.808 kb on + strand, within GFF2957 at 36.809 kb on - strand, within GFF2957 at 36.809 kb on - strand, within GFF2957 at 36.809 kb on - strand, within GFF2957 at 36.809 kb on - strand, within GFF2957 at 36.814 kb on + strand, within GFF2957 at 37.055 kb on - strand at 37.401 kb on - strand, within GFF2958 at 37.401 kb on - strand, within GFF2958 at 37.701 kb on + strand at 37.702 kb on - strand at 37.791 kb on + strand at 37.792 kb on - strand at 37.863 kb on + strand, within GFF2959 at 37.864 kb on - strand, within GFF2959 at 37.864 kb on - strand, within GFF2959 at 37.864 kb on - strand, within GFF2959 at 37.864 kb on - strand, within GFF2959 at 37.939 kb on - strand, within GFF2959 at 38.179 kb on - strand, within GFF2959 at 38.265 kb on + strand, within GFF2959 at 38.265 kb on + strand, within GFF2959 at 38.265 kb on + strand, within GFF2959 at 38.265 kb on + strand, within GFF2959 at 38.265 kb on + strand, within GFF2959 at 38.266 kb on - strand, within GFF2959 at 38.266 kb on - strand, within GFF2959 at 38.403 kb on + strand, within GFF2959 at 38.404 kb on - strand, within GFF2959 at 38.556 kb on + strand, within GFF2959 at 38.556 kb on + strand, within GFF2959 at 38.556 kb on + strand, within GFF2959 at 38.557 kb on - strand, within GFF2959 at 38.557 kb on - strand, within GFF2959
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3 remove 36,160 + -0.9 36,160 + -0.1 36,161 - +0.1 36,238 + GFF2957 0.12 +0.2 36,238 + GFF2957 0.12 -0.5 36,238 + GFF2957 0.12 -0.2 36,239 - GFF2957 0.12 -1.1 36,239 - GFF2957 0.12 -0.4 36,245 - GFF2957 0.13 +0.1 36,245 - GFF2957 0.13 -1.5 36,245 - GFF2957 0.13 -0.1 36,245 - GFF2957 0.13 -0.3 36,245 - GFF2957 0.13 -0.1 36,245 - GFF2957 0.13 +0.4 36,538 + GFF2957 0.41 +0.3 36,539 - GFF2957 0.42 -0.3 36,571 + GFF2957 0.45 +0.3 36,571 + GFF2957 0.45 -0.4 36,571 + GFF2957 0.45 -0.2 36,571 + GFF2957 0.45 -1.1 36,572 - GFF2957 0.45 -0.0 36,572 - GFF2957 0.45 -0.6 36,572 - GFF2957 0.45 +0.3 36,808 + GFF2957 0.68 -0.3 36,809 - GFF2957 0.68 +0.2 36,809 - GFF2957 0.68 -0.1 36,809 - GFF2957 0.68 +1.4 36,809 - GFF2957 0.68 -0.6 36,814 + GFF2957 0.69 +1.1 37,055 - -2.1 37,401 - GFF2958 0.45 +0.0 37,401 - GFF2958 0.45 +0.6 37,701 + -0.7 37,702 - +0.7 37,791 + -0.6 37,792 - -0.8 37,863 + GFF2959 0.13 +0.0 37,864 - GFF2959 0.13 -0.1 37,864 - GFF2959 0.13 -0.2 37,864 - GFF2959 0.13 -1.4 37,864 - GFF2959 0.13 -1.0 37,939 - GFF2959 0.19 +0.6 38,179 - GFF2959 0.37 +0.1 38,265 + GFF2959 0.44 +1.2 38,265 + GFF2959 0.44 -0.6 38,265 + GFF2959 0.44 +0.3 38,265 + GFF2959 0.44 +0.8 38,265 + GFF2959 0.44 -0.6 38,266 - GFF2959 0.44 -1.1 38,266 - GFF2959 0.44 -0.3 38,403 + GFF2959 0.55 +0.1 38,404 - GFF2959 0.55 +0.4 38,556 + GFF2959 0.66 +0.2 38,556 + GFF2959 0.66 +1.6 38,556 + GFF2959 0.66 -0.1 38,557 - GFF2959 0.66 +0.5 38,557 - GFF2959 0.66 +0.3
Or see this region's nucleotide sequence