Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2837

Experiment: Ying_all64 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2835 and GFF2836 are separated by 47 nucleotidesGFF2836 and GFF2837 are separated by 146 nucleotidesGFF2837 and GFF2838 are separated by 45 nucleotides GFF2835 - Protein yqjC precursor, at 427,779 to 428,165 GFF2835 GFF2836 - Transcriptional regulator, IclR family, at 428,213 to 428,968 GFF2836 GFF2837 - Rieske (2Fe-2S) region, at 429,115 to 430,389 GFF2837 GFF2838 - putative exported protein, at 430,435 to 431,412 GFF2838 Position (kb) 429 430 431Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 428.201 kb on + strandat 428.201 kb on + strandat 428.202 kb on - strandat 428.214 kb on + strandat 428.215 kb on - strandat 428.215 kb on - strandat 428.316 kb on + strand, within GFF2836at 428.317 kb on - strand, within GFF2836at 428.317 kb on - strand, within GFF2836at 428.448 kb on + strand, within GFF2836at 428.448 kb on + strand, within GFF2836at 428.449 kb on - strand, within GFF2836at 428.449 kb on - strand, within GFF2836at 428.449 kb on - strand, within GFF2836at 428.449 kb on - strand, within GFF2836at 428.487 kb on + strand, within GFF2836at 428.487 kb on + strand, within GFF2836at 428.487 kb on + strand, within GFF2836at 428.487 kb on + strand, within GFF2836at 428.488 kb on - strand, within GFF2836at 428.488 kb on - strand, within GFF2836at 428.488 kb on - strand, within GFF2836at 428.488 kb on - strand, within GFF2836at 428.488 kb on - strand, within GFF2836at 428.488 kb on - strand, within GFF2836at 428.824 kb on - strand, within GFF2836at 428.994 kb on + strandat 428.994 kb on + strandat 428.994 kb on + strandat 428.995 kb on - strandat 428.995 kb on - strandat 428.995 kb on - strandat 429.344 kb on - strand, within GFF2837at 429.382 kb on + strand, within GFF2837at 429.383 kb on - strand, within GFF2837at 429.383 kb on - strand, within GFF2837at 429.469 kb on + strand, within GFF2837at 429.470 kb on - strand, within GFF2837at 429.505 kb on + strand, within GFF2837at 429.505 kb on + strand, within GFF2837at 429.505 kb on + strand, within GFF2837at 429.505 kb on + strand, within GFF2837at 429.505 kb on + strand, within GFF2837at 429.506 kb on - strand, within GFF2837at 429.506 kb on - strand, within GFF2837at 429.506 kb on - strand, within GFF2837at 429.506 kb on - strand, within GFF2837at 429.506 kb on - strand, within GFF2837at 429.599 kb on - strand, within GFF2837at 429.599 kb on - strand, within GFF2837at 429.599 kb on - strand, within GFF2837at 429.652 kb on + strand, within GFF2837at 429.652 kb on + strand, within GFF2837at 429.652 kb on + strand, within GFF2837at 429.652 kb on + strand, within GFF2837at 429.652 kb on + strand, within GFF2837at 429.652 kb on + strand, within GFF2837at 429.653 kb on - strand, within GFF2837at 429.653 kb on - strand, within GFF2837at 429.653 kb on - strand, within GFF2837at 429.653 kb on - strand, within GFF2837at 429.653 kb on - strand, within GFF2837at 429.653 kb on - strand, within GFF2837at 429.713 kb on - strand, within GFF2837at 429.713 kb on - strand, within GFF2837at 429.713 kb on - strand, within GFF2837at 429.713 kb on - strand, within GFF2837at 429.713 kb on - strand, within GFF2837at 429.713 kb on - strand, within GFF2837at 429.713 kb on - strand, within GFF2837at 429.805 kb on + strand, within GFF2837at 429.805 kb on + strand, within GFF2837at 429.806 kb on - strand, within GFF2837at 429.806 kb on - strand, within GFF2837at 429.808 kb on + strand, within GFF2837at 429.808 kb on + strand, within GFF2837at 429.808 kb on + strand, within GFF2837at 429.809 kb on - strand, within GFF2837at 430.006 kb on + strand, within GFF2837at 430.007 kb on - strand, within GFF2837at 430.055 kb on - strand, within GFF2837at 430.093 kb on + strand, within GFF2837at 430.094 kb on - strand, within GFF2837at 430.094 kb on - strand, within GFF2837at 430.094 kb on - strand, within GFF2837at 430.094 kb on - strand, within GFF2837at 430.094 kb on - strand, within GFF2837at 430.094 kb on - strand, within GFF2837at 430.094 kb on - strand, within GFF2837at 430.126 kb on + strand, within GFF2837at 430.126 kb on + strand, within GFF2837at 430.127 kb on - strand, within GFF2837at 430.127 kb on - strand, within GFF2837at 430.127 kb on - strand, within GFF2837at 430.718 kb on - strand, within GFF2838at 430.718 kb on - strand, within GFF2838at 430.765 kb on + strand, within GFF2838at 430.765 kb on + strand, within GFF2838at 430.766 kb on - strand, within GFF2838at 430.819 kb on + strand, within GFF2838at 430.819 kb on + strand, within GFF2838at 430.897 kb on + strand, within GFF2838at 430.897 kb on + strand, within GFF2838at 430.898 kb on - strand, within GFF2838at 430.898 kb on - strand, within GFF2838at 430.898 kb on - strand, within GFF2838at 430.904 kb on - strand, within GFF2838

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3
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428,201 + +0.5
428,201 + +0.3
428,202 - -0.3
428,214 + +0.3
428,215 - -0.9
428,215 - -0.1
428,316 + GFF2836 0.14 +0.4
428,317 - GFF2836 0.14 +0.8
428,317 - GFF2836 0.14 +1.7
428,448 + GFF2836 0.31 -0.3
428,448 + GFF2836 0.31 -0.7
428,449 - GFF2836 0.31 -0.3
428,449 - GFF2836 0.31 +2.2
428,449 - GFF2836 0.31 -0.1
428,449 - GFF2836 0.31 +0.2
428,487 + GFF2836 0.36 -0.0
428,487 + GFF2836 0.36 +0.9
428,487 + GFF2836 0.36 -0.3
428,487 + GFF2836 0.36 +0.0
428,488 - GFF2836 0.36 +0.2
428,488 - GFF2836 0.36 +1.4
428,488 - GFF2836 0.36 +0.3
428,488 - GFF2836 0.36 +0.9
428,488 - GFF2836 0.36 +1.2
428,488 - GFF2836 0.36 +4.6
428,824 - GFF2836 0.81 +0.9
428,994 + +0.7
428,994 + +0.4
428,994 + +0.5
428,995 - +0.3
428,995 - +0.5
428,995 - +0.9
429,344 - GFF2837 0.18 -0.2
429,382 + GFF2837 0.21 -0.7
429,383 - GFF2837 0.21 -0.3
429,383 - GFF2837 0.21 -0.5
429,469 + GFF2837 0.28 +0.0
429,470 - GFF2837 0.28 +0.5
429,505 + GFF2837 0.31 +0.1
429,505 + GFF2837 0.31 +0.1
429,505 + GFF2837 0.31 -0.1
429,505 + GFF2837 0.31 +1.9
429,505 + GFF2837 0.31 -0.7
429,506 - GFF2837 0.31 +0.3
429,506 - GFF2837 0.31 -0.5
429,506 - GFF2837 0.31 -0.1
429,506 - GFF2837 0.31 +1.9
429,506 - GFF2837 0.31 -0.3
429,599 - GFF2837 0.38 -0.4
429,599 - GFF2837 0.38 -2.1
429,599 - GFF2837 0.38 +0.2
429,652 + GFF2837 0.42 +1.2
429,652 + GFF2837 0.42 -0.9
429,652 + GFF2837 0.42 -0.4
429,652 + GFF2837 0.42 +0.2
429,652 + GFF2837 0.42 -0.4
429,652 + GFF2837 0.42 -0.8
429,653 - GFF2837 0.42 -0.1
429,653 - GFF2837 0.42 -0.1
429,653 - GFF2837 0.42 -0.7
429,653 - GFF2837 0.42 -1.0
429,653 - GFF2837 0.42 +0.3
429,653 - GFF2837 0.42 +0.5
429,713 - GFF2837 0.47 +0.0
429,713 - GFF2837 0.47 -0.0
429,713 - GFF2837 0.47 +0.4
429,713 - GFF2837 0.47 -0.0
429,713 - GFF2837 0.47 -1.3
429,713 - GFF2837 0.47 -0.3
429,713 - GFF2837 0.47 -0.2
429,805 + GFF2837 0.54 +0.3
429,805 + GFF2837 0.54 +0.2
429,806 - GFF2837 0.54 +1.2
429,806 - GFF2837 0.54 +1.2
429,808 + GFF2837 0.54 -0.5
429,808 + GFF2837 0.54 +0.2
429,808 + GFF2837 0.54 -2.4
429,809 - GFF2837 0.54 -0.6
430,006 + GFF2837 0.70 +0.9
430,007 - GFF2837 0.70 -0.5
430,055 - GFF2837 0.74 -0.6
430,093 + GFF2837 0.77 -1.1
430,094 - GFF2837 0.77 +0.3
430,094 - GFF2837 0.77 +2.9
430,094 - GFF2837 0.77 +0.1
430,094 - GFF2837 0.77 -0.1
430,094 - GFF2837 0.77 +0.2
430,094 - GFF2837 0.77 +0.7
430,094 - GFF2837 0.77 -0.4
430,126 + GFF2837 0.79 +0.3
430,126 + GFF2837 0.79 -0.5
430,127 - GFF2837 0.79 -0.9
430,127 - GFF2837 0.79 -0.7
430,127 - GFF2837 0.79 +0.0
430,718 - GFF2838 0.29 -1.7
430,718 - GFF2838 0.29 -0.2
430,765 + GFF2838 0.34 +1.3
430,765 + GFF2838 0.34 -2.3
430,766 - GFF2838 0.34 +3.2
430,819 + GFF2838 0.39 +0.1
430,819 + GFF2838 0.39 -1.1
430,897 + GFF2838 0.47 -0.4
430,897 + GFF2838 0.47 -0.6
430,898 - GFF2838 0.47 +0.9
430,898 - GFF2838 0.47 +0.9
430,898 - GFF2838 0.47 -0.7
430,904 - GFF2838 0.48 +0.9

Or see this region's nucleotide sequence