Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2834

Experiment: Ying_all64 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2833 and GFF2834 are separated by 52 nucleotidesGFF2834 and GFF2835 are separated by 19 nucleotidesGFF2835 and GFF2836 are separated by 47 nucleotides GFF2833 - DNA polymerase III epsilon subunit (EC 2.7.7.7), at 425,212 to 426,117 GFF2833 GFF2834 - Probable major facilitator superfamily (MFS) transporter, at 426,170 to 427,759 GFF2834 GFF2835 - Protein yqjC precursor, at 427,779 to 428,165 GFF2835 GFF2836 - Transcriptional regulator, IclR family, at 428,213 to 428,968 GFF2836 Position (kb) 426 427 428Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 425.242 kb on + strandat 425.243 kb on - strandat 425.472 kb on + strand, within GFF2833at 425.472 kb on + strand, within GFF2833at 425.472 kb on + strand, within GFF2833at 425.472 kb on + strand, within GFF2833at 425.472 kb on + strand, within GFF2833at 425.472 kb on + strand, within GFF2833at 425.472 kb on + strand, within GFF2833at 425.473 kb on - strand, within GFF2833at 425.473 kb on - strand, within GFF2833at 425.473 kb on - strand, within GFF2833at 425.473 kb on - strand, within GFF2833at 425.473 kb on - strand, within GFF2833at 425.473 kb on - strand, within GFF2833at 425.473 kb on - strand, within GFF2833at 425.746 kb on + strand, within GFF2833at 425.746 kb on + strand, within GFF2833at 425.746 kb on + strand, within GFF2833at 425.746 kb on + strand, within GFF2833at 425.747 kb on - strand, within GFF2833at 425.747 kb on - strand, within GFF2833at 425.956 kb on + strand, within GFF2833at 425.956 kb on + strand, within GFF2833at 425.956 kb on + strand, within GFF2833at 425.956 kb on + strand, within GFF2833at 425.956 kb on + strand, within GFF2833at 425.956 kb on + strand, within GFF2833at 425.956 kb on + strand, within GFF2833at 425.957 kb on - strand, within GFF2833at 425.957 kb on - strand, within GFF2833at 425.957 kb on - strand, within GFF2833at 425.957 kb on - strand, within GFF2833at 426.019 kb on + strand, within GFF2833at 426.019 kb on + strand, within GFF2833at 426.019 kb on + strand, within GFF2833at 426.020 kb on - strand, within GFF2833at 426.020 kb on - strand, within GFF2833at 426.020 kb on - strand, within GFF2833at 426.020 kb on - strand, within GFF2833at 426.115 kb on + strandat 426.115 kb on + strandat 426.116 kb on - strandat 426.158 kb on + strandat 426.158 kb on + strandat 426.158 kb on + strandat 426.158 kb on + strandat 426.158 kb on + strandat 426.158 kb on + strandat 426.158 kb on + strandat 426.158 kb on + strandat 426.159 kb on - strandat 426.159 kb on - strandat 426.159 kb on - strandat 426.201 kb on + strandat 426.201 kb on + strandat 426.202 kb on - strandat 426.419 kb on + strand, within GFF2834at 426.419 kb on + strand, within GFF2834at 426.419 kb on + strand, within GFF2834at 426.419 kb on + strand, within GFF2834at 426.420 kb on - strand, within GFF2834at 426.420 kb on - strand, within GFF2834at 426.420 kb on - strand, within GFF2834at 426.420 kb on - strand, within GFF2834at 426.420 kb on - strand, within GFF2834at 426.827 kb on + strand, within GFF2834at 426.827 kb on + strand, within GFF2834at 426.827 kb on + strand, within GFF2834at 426.828 kb on - strand, within GFF2834at 426.843 kb on - strand, within GFF2834at 426.843 kb on - strand, within GFF2834at 427.031 kb on + strand, within GFF2834at 427.031 kb on + strand, within GFF2834at 427.032 kb on - strand, within GFF2834at 427.232 kb on + strand, within GFF2834at 427.232 kb on + strand, within GFF2834at 427.232 kb on + strand, within GFF2834at 427.232 kb on + strand, within GFF2834at 427.232 kb on + strand, within GFF2834at 427.232 kb on + strand, within GFF2834at 427.233 kb on - strand, within GFF2834at 427.233 kb on - strand, within GFF2834at 427.233 kb on - strand, within GFF2834at 428.201 kb on + strandat 428.201 kb on + strandat 428.202 kb on - strandat 428.214 kb on + strandat 428.215 kb on - strandat 428.215 kb on - strandat 428.316 kb on + strand, within GFF2836at 428.317 kb on - strand, within GFF2836at 428.317 kb on - strand, within GFF2836at 428.448 kb on + strand, within GFF2836at 428.448 kb on + strand, within GFF2836at 428.449 kb on - strand, within GFF2836at 428.449 kb on - strand, within GFF2836at 428.449 kb on - strand, within GFF2836at 428.449 kb on - strand, within GFF2836at 428.487 kb on + strand, within GFF2836at 428.487 kb on + strand, within GFF2836at 428.487 kb on + strand, within GFF2836at 428.487 kb on + strand, within GFF2836at 428.488 kb on - strand, within GFF2836at 428.488 kb on - strand, within GFF2836at 428.488 kb on - strand, within GFF2836at 428.488 kb on - strand, within GFF2836at 428.488 kb on - strand, within GFF2836at 428.488 kb on - strand, within GFF2836

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3
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425,242 + -1.5
425,243 - -0.1
425,472 + GFF2833 0.29 +0.4
425,472 + GFF2833 0.29 +1.3
425,472 + GFF2833 0.29 +0.1
425,472 + GFF2833 0.29 +0.8
425,472 + GFF2833 0.29 +0.1
425,472 + GFF2833 0.29 -0.1
425,472 + GFF2833 0.29 +0.2
425,473 - GFF2833 0.29 +0.4
425,473 - GFF2833 0.29 -0.5
425,473 - GFF2833 0.29 +0.2
425,473 - GFF2833 0.29 -0.9
425,473 - GFF2833 0.29 +0.4
425,473 - GFF2833 0.29 +0.1
425,473 - GFF2833 0.29 +0.0
425,746 + GFF2833 0.59 -0.2
425,746 + GFF2833 0.59 -0.7
425,746 + GFF2833 0.59 +0.2
425,746 + GFF2833 0.59 +0.7
425,747 - GFF2833 0.59 +0.3
425,747 - GFF2833 0.59 +1.1
425,956 + GFF2833 0.82 +0.4
425,956 + GFF2833 0.82 -1.1
425,956 + GFF2833 0.82 +0.1
425,956 + GFF2833 0.82 +0.6
425,956 + GFF2833 0.82 +0.9
425,956 + GFF2833 0.82 -1.1
425,956 + GFF2833 0.82 -0.0
425,957 - GFF2833 0.82 -0.4
425,957 - GFF2833 0.82 +0.9
425,957 - GFF2833 0.82 +0.4
425,957 - GFF2833 0.82 +1.6
426,019 + GFF2833 0.89 -0.1
426,019 + GFF2833 0.89 +0.1
426,019 + GFF2833 0.89 -0.4
426,020 - GFF2833 0.89 -0.1
426,020 - GFF2833 0.89 +0.3
426,020 - GFF2833 0.89 +0.9
426,020 - GFF2833 0.89 +0.6
426,115 + -1.3
426,115 + +0.1
426,116 - -0.1
426,158 + -0.3
426,158 + -0.6
426,158 + +0.2
426,158 + -0.2
426,158 + -0.1
426,158 + +0.5
426,158 + +0.6
426,158 + -0.4
426,159 - +0.3
426,159 - -1.8
426,159 - +2.6
426,201 + -0.1
426,201 + +1.0
426,202 - +0.0
426,419 + GFF2834 0.16 +0.1
426,419 + GFF2834 0.16 +0.7
426,419 + GFF2834 0.16 -0.7
426,419 + GFF2834 0.16 +0.0
426,420 - GFF2834 0.16 -0.0
426,420 - GFF2834 0.16 -0.7
426,420 - GFF2834 0.16 -0.1
426,420 - GFF2834 0.16 -0.7
426,420 - GFF2834 0.16 -0.7
426,827 + GFF2834 0.41 -0.0
426,827 + GFF2834 0.41 -1.1
426,827 + GFF2834 0.41 -1.0
426,828 - GFF2834 0.41 -0.4
426,843 - GFF2834 0.42 -1.7
426,843 - GFF2834 0.42 -0.6
427,031 + GFF2834 0.54 -0.3
427,031 + GFF2834 0.54 +0.9
427,032 - GFF2834 0.54 -0.1
427,232 + GFF2834 0.67 -0.3
427,232 + GFF2834 0.67 -2.0
427,232 + GFF2834 0.67 +1.2
427,232 + GFF2834 0.67 -0.1
427,232 + GFF2834 0.67 -0.1
427,232 + GFF2834 0.67 +0.3
427,233 - GFF2834 0.67 +0.0
427,233 - GFF2834 0.67 +0.2
427,233 - GFF2834 0.67 -0.1
428,201 + +0.5
428,201 + +0.3
428,202 - -0.3
428,214 + +0.3
428,215 - -0.9
428,215 - -0.1
428,316 + GFF2836 0.14 +0.4
428,317 - GFF2836 0.14 +0.8
428,317 - GFF2836 0.14 +1.7
428,448 + GFF2836 0.31 -0.3
428,448 + GFF2836 0.31 -0.7
428,449 - GFF2836 0.31 -0.3
428,449 - GFF2836 0.31 +2.2
428,449 - GFF2836 0.31 -0.1
428,449 - GFF2836 0.31 +0.2
428,487 + GFF2836 0.36 -0.0
428,487 + GFF2836 0.36 +0.9
428,487 + GFF2836 0.36 -0.3
428,487 + GFF2836 0.36 +0.0
428,488 - GFF2836 0.36 +0.2
428,488 - GFF2836 0.36 +1.4
428,488 - GFF2836 0.36 +0.3
428,488 - GFF2836 0.36 +0.9
428,488 - GFF2836 0.36 +1.2
428,488 - GFF2836 0.36 +4.6

Or see this region's nucleotide sequence