Experiment: Ying_all64 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2812 and GFF2813 are separated by 10 nucleotides GFF2813 and GFF2814 are separated by 92 nucleotides GFF2814 and GFF2815 are separated by 69 nucleotides
GFF2812 - Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3), at 411,176 to 411,988
GFF2812
GFF2813 - FIG00761799: membrane protein, at 411,999 to 412,307
GFF2813
GFF2814 - Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3), at 412,400 to 414,133
GFF2814
GFF2815 - Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3), at 414,203 to 415,798
GFF2815
Position (kb) 412
413
414
415 Strain fitness (log2 ratio) -1
0
1
2 at 411.551 kb on + strand, within GFF2812 at 411.551 kb on + strand, within GFF2812 at 411.552 kb on - strand, within GFF2812 at 411.552 kb on - strand, within GFF2812 at 411.552 kb on - strand, within GFF2812 at 411.780 kb on + strand, within GFF2812 at 411.954 kb on - strand at 411.954 kb on - strand at 411.954 kb on - strand at 412.176 kb on + strand, within GFF2813 at 412.177 kb on - strand, within GFF2813 at 412.684 kb on + strand, within GFF2814 at 412.684 kb on + strand, within GFF2814 at 412.684 kb on + strand, within GFF2814 at 412.685 kb on - strand, within GFF2814 at 412.763 kb on + strand, within GFF2814 at 412.763 kb on + strand, within GFF2814 at 412.764 kb on - strand, within GFF2814 at 412.805 kb on + strand, within GFF2814 at 412.806 kb on - strand, within GFF2814 at 412.838 kb on + strand, within GFF2814 at 412.839 kb on - strand, within GFF2814 at 412.839 kb on - strand, within GFF2814 at 412.839 kb on - strand, within GFF2814 at 412.862 kb on + strand, within GFF2814 at 412.862 kb on + strand, within GFF2814 at 412.863 kb on - strand, within GFF2814 at 412.863 kb on - strand, within GFF2814 at 412.934 kb on + strand, within GFF2814 at 412.968 kb on - strand, within GFF2814 at 413.027 kb on + strand, within GFF2814 at 413.028 kb on - strand, within GFF2814 at 413.028 kb on - strand, within GFF2814 at 413.028 kb on - strand, within GFF2814 at 413.028 kb on - strand, within GFF2814 at 413.028 kb on - strand, within GFF2814 at 413.033 kb on + strand, within GFF2814 at 413.034 kb on - strand, within GFF2814 at 413.121 kb on + strand, within GFF2814 at 413.126 kb on + strand, within GFF2814 at 413.126 kb on + strand, within GFF2814 at 413.127 kb on - strand, within GFF2814 at 413.127 kb on - strand, within GFF2814 at 413.333 kb on + strand, within GFF2814 at 413.348 kb on + strand, within GFF2814 at 413.348 kb on + strand, within GFF2814 at 413.349 kb on - strand, within GFF2814 at 413.369 kb on + strand, within GFF2814 at 413.369 kb on + strand, within GFF2814 at 413.456 kb on + strand, within GFF2814 at 413.457 kb on - strand, within GFF2814 at 413.457 kb on - strand, within GFF2814 at 413.457 kb on - strand, within GFF2814 at 413.556 kb on - strand, within GFF2814 at 413.652 kb on - strand, within GFF2814 at 413.786 kb on + strand, within GFF2814 at 413.787 kb on - strand, within GFF2814 at 414.020 kb on + strand at 414.020 kb on + strand at 414.021 kb on - strand at 414.021 kb on - strand at 414.089 kb on + strand at 414.089 kb on + strand at 414.089 kb on + strand at 414.153 kb on + strand at 414.154 kb on - strand at 414.154 kb on - strand at 414.154 kb on - strand at 414.154 kb on - strand at 414.248 kb on + strand at 414.672 kb on - strand, within GFF2815
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3 remove 411,551 + GFF2812 0.46 -0.0 411,551 + GFF2812 0.46 +0.7 411,552 - GFF2812 0.46 -1.7 411,552 - GFF2812 0.46 -0.4 411,552 - GFF2812 0.46 +0.0 411,780 + GFF2812 0.74 -0.3 411,954 - +0.2 411,954 - -1.4 411,954 - -0.3 412,176 + GFF2813 0.57 +0.1 412,177 - GFF2813 0.58 -1.2 412,684 + GFF2814 0.16 +1.2 412,684 + GFF2814 0.16 -0.3 412,684 + GFF2814 0.16 +1.2 412,685 - GFF2814 0.16 -0.4 412,763 + GFF2814 0.21 -0.1 412,763 + GFF2814 0.21 +0.2 412,764 - GFF2814 0.21 -0.4 412,805 + GFF2814 0.23 +0.3 412,806 - GFF2814 0.23 -0.2 412,838 + GFF2814 0.25 +0.5 412,839 - GFF2814 0.25 -0.1 412,839 - GFF2814 0.25 -0.3 412,839 - GFF2814 0.25 -0.1 412,862 + GFF2814 0.27 -0.3 412,862 + GFF2814 0.27 -0.3 412,863 - GFF2814 0.27 -0.5 412,863 - GFF2814 0.27 -0.1 412,934 + GFF2814 0.31 +0.7 412,968 - GFF2814 0.33 +0.7 413,027 + GFF2814 0.36 -0.4 413,028 - GFF2814 0.36 +0.1 413,028 - GFF2814 0.36 -0.7 413,028 - GFF2814 0.36 +0.4 413,028 - GFF2814 0.36 +0.5 413,028 - GFF2814 0.36 +2.2 413,033 + GFF2814 0.37 -0.1 413,034 - GFF2814 0.37 -0.0 413,121 + GFF2814 0.42 +0.7 413,126 + GFF2814 0.42 +0.3 413,126 + GFF2814 0.42 +0.6 413,127 - GFF2814 0.42 +0.7 413,127 - GFF2814 0.42 +1.1 413,333 + GFF2814 0.54 -0.1 413,348 + GFF2814 0.55 -0.1 413,348 + GFF2814 0.55 +0.5 413,349 - GFF2814 0.55 -0.2 413,369 + GFF2814 0.56 +1.7 413,369 + GFF2814 0.56 +0.4 413,456 + GFF2814 0.61 +1.2 413,457 - GFF2814 0.61 +0.7 413,457 - GFF2814 0.61 +0.4 413,457 - GFF2814 0.61 -0.7 413,556 - GFF2814 0.67 -1.7 413,652 - GFF2814 0.72 -0.4 413,786 + GFF2814 0.80 -0.0 413,787 - GFF2814 0.80 -1.3 414,020 + +0.2 414,020 + +0.3 414,021 - +0.3 414,021 - -0.1 414,089 + +0.6 414,089 + +0.2 414,089 + +0.9 414,153 + -0.3 414,154 - +0.7 414,154 - -0.7 414,154 - -0.4 414,154 - +0.7 414,248 + +0.5 414,672 - GFF2815 0.29 +0.1
Or see this region's nucleotide sequence