Experiment: Ying_all64 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2388 and GFF2389 are separated by 26 nucleotides GFF2389 and GFF2390 overlap by 4 nucleotides GFF2390 and GFF2391 are separated by 12 nucleotides GFF2391 and GFF2392 are separated by 47 nucleotides
GFF2388 - monooxygenase, FAD-binding, at 30,073 to 31,617
GFF2388
GFF2389 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 31,644 to 32,402
GFF2389
GFF2390 - Alkanesulfonates transport system permease protein, at 32,399 to 33,187
GFF2390
GFF2391 - Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB, at 33,200 to 33,958
GFF2391
GFF2392 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 34,006 to 35,055
GFF2392
Position (kb) 32
33
34 Strain fitness (log2 ratio) -1
0
1 at 31.618 kb on - strand at 31.793 kb on - strand, within GFF2389 at 32.108 kb on - strand, within GFF2389 at 32.479 kb on - strand, within GFF2390 at 32.724 kb on + strand, within GFF2390 at 32.725 kb on - strand, within GFF2390 at 32.856 kb on - strand, within GFF2390 at 32.890 kb on + strand, within GFF2390 at 32.977 kb on - strand, within GFF2390 at 32.977 kb on - strand, within GFF2390 at 33.072 kb on + strand, within GFF2390 at 33.246 kb on + strand at 33.875 kb on + strand, within GFF2391
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3 remove 31,618 - +1.0 31,793 - GFF2389 0.20 +1.2 32,108 - GFF2389 0.61 +0.2 32,479 - GFF2390 0.10 -0.1 32,724 + GFF2390 0.41 +0.3 32,725 - GFF2390 0.41 +0.4 32,856 - GFF2390 0.58 -0.1 32,890 + GFF2390 0.62 +0.1 32,977 - GFF2390 0.73 -0.8 32,977 - GFF2390 0.73 -1.6 33,072 + GFF2390 0.85 -0.2 33,246 + +0.0 33,875 + GFF2391 0.89 +0.2
Or see this region's nucleotide sequence