Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2289

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
1,174,135	+		GFF2288	0.40	+0.0
1,174,135	+		GFF2288	0.40	-0.6
1,174,136	-		GFF2288	0.40	+0.2
1,174,136	-		GFF2288	0.40	-0.2
1,174,136	-		GFF2288	0.40	-0.3
1,174,136	-		GFF2288	0.40	-0.2
1,174,136	-		GFF2288	0.40	-0.0
1,174,292	-		GFF2288	0.50	-0.9
1,174,345	+		GFF2288	0.53	-2.2
1,174,345	+		GFF2288	0.53	-0.1
1,174,346	-		GFF2288	0.53	+0.9
1,174,504	+		GFF2288	0.63	+1.2
1,174,504	+		GFF2288	0.63	-0.1
1,174,504	+		GFF2288	0.63	-0.1
1,174,505	-		GFF2288	0.63	-0.4
1,174,505	-		GFF2288	0.63	-0.1
1,174,505	-		GFF2288	0.63	-0.1
1,174,505	-		GFF2288	0.63	-0.1
1,174,762	+		GFF2288	0.78	-0.3
1,174,763	-		GFF2288	0.78	+0.1
1,174,763	-		GFF2288	0.78	+0.8
1,174,771	+		GFF2288	0.79	-0.1
1,174,771	+		GFF2288	0.79	-0.6
1,174,772	-		GFF2288	0.79	+0.7
1,174,772	-		GFF2288	0.79	+0.3
1,174,772	-		GFF2288	0.79	+0.5
1,174,772	-		GFF2288	0.79	-0.1
1,174,772	-		GFF2288	0.79	+0.4
1,174,772	-		GFF2288	0.79	-1.6
1,174,837	+		GFF2288	0.83	-0.5
1,174,838	-		GFF2288	0.83	+0.7
1,174,838	-		GFF2288	0.83	+0.3
1,174,838	-		GFF2288	0.83	+0.4
1,175,205	+				-0.5
1,175,206	-				+0.1
1,175,206	-				-0.0
1,175,322	+		GFF2289	0.22	+1.4
1,175,322	+		GFF2289	0.22	-0.1
1,175,331	+		GFF2289	0.23	+0.2
1,175,583	+		GFF2289	0.50	+1.3
1,175,877	+		GFF2289	0.81	+0.4
1,175,877	+		GFF2289	0.81	-0.4
1,175,878	-		GFF2289	0.81	+0.2
1,175,878	-		GFF2289	0.81	+0.6
1,175,878	-		GFF2289	0.81	-0.3
1,175,887	-		GFF2289	0.82	+0.1
1,175,919	+		GFF2289	0.86	-0.1
1,176,245	+		GFF2290	0.23	-0.1
1,176,245	+		GFF2290	0.23	-1.6
1,176,245	+		GFF2290	0.23	+0.5
1,176,296	+		GFF2290	0.29	+0.2
1,176,296	+		GFF2290	0.29	-0.0
1,176,296	+		GFF2290	0.29	+0.1
1,176,297	-		GFF2290	0.29	+0.9
1,176,297	-		GFF2290	0.29	+0.4
1,176,297	-		GFF2290	0.29	+0.1
1,176,426	-		GFF2290	0.44	-1.2
1,176,467	+		GFF2290	0.49	-0.6
1,176,467	+		GFF2290	0.49	+0.7
1,176,467	+		GFF2290	0.49	+0.3
1,176,506	+		GFF2290	0.53	+0.5
1,176,507	-		GFF2290	0.54	+0.9