Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2184

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
1,075,060	-		GFF2183	0.11	-0.3
1,075,060	-		GFF2183	0.11	+0.7
1,075,105	-		GFF2183	0.16	+0.4
1,075,404	+		GFF2183	0.45	+0.3
1,075,404	+		GFF2183	0.45	-0.0
1,075,404	+		GFF2183	0.45	-0.7
1,075,405	-		GFF2183	0.45	-1.2
1,075,405	-		GFF2183	0.45	-1.0
1,075,455	+		GFF2183	0.50	+1.0
1,075,455	+		GFF2183	0.50	-0.1
1,075,509	+		GFF2183	0.55	+0.2
1,075,510	-		GFF2183	0.56	-1.4
1,075,554	+		GFF2183	0.60	+0.1
1,075,674	+		GFF2183	0.72	-0.8
1,075,675	-		GFF2183	0.72	-0.6
1,075,716	+		GFF2183	0.76	-0.0
1,075,717	-		GFF2183	0.76	+0.4
1,075,731	+		GFF2183	0.77	-0.7
1,075,917	+				-0.1
1,075,918	-				-0.2
1,075,918	-				+0.5
1,075,959	+				+0.7
1,076,110	-		GFF2184	0.12	+0.5
1,076,260	-		GFF2184	0.27	+0.2
1,076,322	+		GFF2184	0.34	-0.2
1,076,323	-		GFF2184	0.34	-0.0
1,076,751	+		GFF2184	0.78	-0.4
1,076,751	+		GFF2184	0.78	+1.4
1,076,752	-		GFF2184	0.78	+0.3
1,076,752	-		GFF2184	0.78	-0.2
1,076,752	-		GFF2184	0.78	+0.5
1,076,905	-				-0.1
1,076,905	-				+1.0
1,076,928	+				+0.0
1,076,929	-				-0.1
1,076,929	-				+0.7
1,077,079	+				-0.9
1,077,080	-				-0.4
1,077,318	+		GFF2185	0.31	-0.5
1,077,527	-		GFF2185	0.50	-1.0
1,077,527	-		GFF2185	0.50	-0.3
1,077,527	-		GFF2185	0.50	-0.3
1,077,707	-		GFF2185	0.66	-0.5
1,077,707	-		GFF2185	0.66	-0.9
1,077,707	-		GFF2185	0.66	-0.3
1,077,824	-		GFF2185	0.77	+1.2
1,077,861	+		GFF2185	0.80	+1.6