Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2163

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
1,053,957	-				-0.0
1,053,957	-				-0.6
1,054,186	+		GFF2162	0.26	-0.2
1,054,187	-		GFF2162	0.26	-0.9
1,054,234	+		GFF2162	0.32	+0.3
1,054,252	+		GFF2162	0.34	+0.1
1,054,252	+		GFF2162	0.34	-0.3
1,054,327	+		GFF2162	0.42	-0.0
1,054,328	-		GFF2162	0.42	+1.0
1,055,461	-		GFF2163	0.74	-0.8
1,055,691	-				-0.5
1,055,738	+				+1.1
1,056,443	-				-0.0
1,056,589	+				-0.2
1,056,590	-				+0.3
1,056,590	-				+0.3