Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2154

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
1,044,362	+		GFF2153	0.32	+0.2
1,044,362	+		GFF2153	0.32	-0.0
1,044,363	-		GFF2153	0.32	+1.0
1,044,363	-		GFF2153	0.32	-0.7
1,044,892	-		GFF2153	0.68	+0.5
1,044,892	-		GFF2153	0.68	+0.1
1,044,976	-		GFF2153	0.74	-0.0
1,044,976	-		GFF2153	0.74	+0.6
1,044,976	-		GFF2153	0.74	+0.4
1,045,122	+		GFF2153	0.84	-0.2
1,045,122	+		GFF2153	0.84	+0.1
1,045,234	-				-1.4
1,045,234	-				-0.6
1,045,357	-				+0.5
1,045,534	-		GFF2154	0.27	+0.3
1,045,791	+		GFF2154	0.66	-0.3
1,045,791	+		GFF2154	0.66	-1.0
1,045,815	+		GFF2154	0.69	+0.0
1,045,815	+		GFF2154	0.69	-0.9
1,045,860	+		GFF2154	0.76	-0.3
1,045,861	-		GFF2154	0.76	-1.8
1,045,861	-		GFF2154	0.76	+0.2
1,046,028	+				+0.1
1,046,029	-				+1.1
1,046,029	-				+1.5
1,046,029	-				+0.6
1,046,029	-				+1.1
1,046,107	+				+0.4
1,046,141	+				-0.6
1,046,965	-				-0.4
1,046,965	-				+0.3