Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2060

Experiment: Ying_all64 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2059 and GFF2060 are separated by 56 nucleotidesGFF2060 and GFF2061 are separated by 5 nucleotidesGFF2061 and GFF2062 are separated by 18 nucleotides GFF2059 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 941,086 to 941,868 GFF2059 GFF2060 - TRAP transporter solute receptor, unknown substrate 6, at 941,925 to 943,019 GFF2060 GFF2061 - TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 6, at 943,025 to 943,567 GFF2061 GFF2062 - TRAP dicarboxylate transporter, DctM subunit, unknown substrate 6, at 943,586 to 944,980 GFF2062 Position (kb) 941 942 943 944Strain fitness (log2 ratio) -2 -1 0 1at 940.989 kb on + strandat 940.990 kb on - strandat 940.990 kb on - strandat 940.990 kb on - strandat 941.014 kb on + strandat 941.014 kb on + strandat 941.015 kb on - strandat 941.015 kb on - strandat 941.015 kb on - strandat 941.015 kb on - strandat 941.015 kb on - strandat 941.165 kb on - strand, within GFF2059at 941.311 kb on + strand, within GFF2059at 941.311 kb on + strand, within GFF2059at 941.312 kb on - strand, within GFF2059at 941.707 kb on + strand, within GFF2059at 941.707 kb on + strand, within GFF2059at 941.708 kb on - strand, within GFF2059at 941.708 kb on - strand, within GFF2059at 941.708 kb on - strand, within GFF2059at 941.718 kb on + strand, within GFF2059at 941.718 kb on + strand, within GFF2059at 941.719 kb on - strand, within GFF2059at 941.816 kb on - strandat 941.934 kb on - strandat 941.934 kb on - strandat 942.039 kb on + strand, within GFF2060at 942.064 kb on - strand, within GFF2060at 942.222 kb on + strand, within GFF2060at 942.222 kb on + strand, within GFF2060at 942.223 kb on - strand, within GFF2060at 942.226 kb on - strand, within GFF2060at 942.226 kb on - strand, within GFF2060at 942.303 kb on + strand, within GFF2060at 942.348 kb on + strand, within GFF2060at 942.348 kb on + strand, within GFF2060at 942.349 kb on - strand, within GFF2060at 942.361 kb on - strand, within GFF2060at 942.565 kb on - strand, within GFF2060at 942.615 kb on + strand, within GFF2060at 942.615 kb on + strand, within GFF2060at 942.616 kb on - strand, within GFF2060at 942.616 kb on - strand, within GFF2060at 942.616 kb on - strand, within GFF2060at 942.616 kb on - strand, within GFF2060at 942.618 kb on + strand, within GFF2060at 942.618 kb on + strand, within GFF2060at 942.618 kb on + strand, within GFF2060at 942.619 kb on - strand, within GFF2060at 942.619 kb on - strand, within GFF2060at 942.621 kb on + strand, within GFF2060at 942.621 kb on + strand, within GFF2060at 942.621 kb on + strand, within GFF2060at 942.621 kb on + strand, within GFF2060at 942.621 kb on + strand, within GFF2060at 942.621 kb on + strand, within GFF2060at 942.621 kb on + strand, within GFF2060at 942.622 kb on - strand, within GFF2060at 942.622 kb on - strand, within GFF2060at 942.622 kb on - strand, within GFF2060at 942.622 kb on - strand, within GFF2060at 942.624 kb on + strand, within GFF2060at 942.759 kb on + strand, within GFF2060at 942.759 kb on + strand, within GFF2060at 942.760 kb on - strand, within GFF2060at 942.760 kb on - strand, within GFF2060at 942.760 kb on - strand, within GFF2060at 942.760 kb on - strand, within GFF2060at 942.760 kb on - strand, within GFF2060at 942.849 kb on + strand, within GFF2060at 942.849 kb on + strand, within GFF2060at 942.907 kb on - strand, within GFF2060at 942.921 kb on + strandat 942.921 kb on + strandat 942.921 kb on + strandat 942.921 kb on + strandat 942.921 kb on + strandat 942.976 kb on - strandat 943.215 kb on - strand, within GFF2061at 943.271 kb on + strand, within GFF2061at 943.272 kb on - strand, within GFF2061at 943.272 kb on - strand, within GFF2061at 943.272 kb on - strand, within GFF2061at 943.388 kb on + strand, within GFF2061at 943.547 kb on + strandat 943.548 kb on - strandat 943.575 kb on + strandat 943.575 kb on + strandat 943.576 kb on - strandat 944.009 kb on + strand, within GFF2062at 944.010 kb on - strand, within GFF2062

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3
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940,989 + -0.2
940,990 - -0.2
940,990 - -0.6
940,990 - -0.0
941,014 + -0.2
941,014 + -0.9
941,015 - +0.1
941,015 - -0.6
941,015 - +1.6
941,015 - -0.4
941,015 - -1.0
941,165 - GFF2059 0.10 -2.6
941,311 + GFF2059 0.29 -0.0
941,311 + GFF2059 0.29 +0.7
941,312 - GFF2059 0.29 -0.0
941,707 + GFF2059 0.79 -0.2
941,707 + GFF2059 0.79 +1.6
941,708 - GFF2059 0.79 -0.3
941,708 - GFF2059 0.79 +0.6
941,708 - GFF2059 0.79 +0.9
941,718 + GFF2059 0.81 +0.2
941,718 + GFF2059 0.81 +0.2
941,719 - GFF2059 0.81 -0.1
941,816 - -0.2
941,934 - +0.4
941,934 - +0.2
942,039 + GFF2060 0.10 +1.5
942,064 - GFF2060 0.13 +0.7
942,222 + GFF2060 0.27 +1.2
942,222 + GFF2060 0.27 -0.0
942,223 - GFF2060 0.27 +0.2
942,226 - GFF2060 0.27 -0.0
942,226 - GFF2060 0.27 +0.2
942,303 + GFF2060 0.35 -0.0
942,348 + GFF2060 0.39 +0.7
942,348 + GFF2060 0.39 -1.2
942,349 - GFF2060 0.39 -0.0
942,361 - GFF2060 0.40 -0.4
942,565 - GFF2060 0.58 -0.0
942,615 + GFF2060 0.63 -0.0
942,615 + GFF2060 0.63 -0.2
942,616 - GFF2060 0.63 -0.3
942,616 - GFF2060 0.63 -0.0
942,616 - GFF2060 0.63 -0.5
942,616 - GFF2060 0.63 -0.0
942,618 + GFF2060 0.63 +0.1
942,618 + GFF2060 0.63 +0.5
942,618 + GFF2060 0.63 -1.2
942,619 - GFF2060 0.63 -0.7
942,619 - GFF2060 0.63 -0.4
942,621 + GFF2060 0.64 +0.2
942,621 + GFF2060 0.64 +0.1
942,621 + GFF2060 0.64 +0.4
942,621 + GFF2060 0.64 -0.1
942,621 + GFF2060 0.64 -0.2
942,621 + GFF2060 0.64 -0.1
942,621 + GFF2060 0.64 +0.1
942,622 - GFF2060 0.64 -0.3
942,622 - GFF2060 0.64 +0.3
942,622 - GFF2060 0.64 -0.6
942,622 - GFF2060 0.64 -1.2
942,624 + GFF2060 0.64 -0.6
942,759 + GFF2060 0.76 -0.6
942,759 + GFF2060 0.76 +0.2
942,760 - GFF2060 0.76 -0.0
942,760 - GFF2060 0.76 +0.1
942,760 - GFF2060 0.76 +0.2
942,760 - GFF2060 0.76 -0.6
942,760 - GFF2060 0.76 +0.4
942,849 + GFF2060 0.84 +0.2
942,849 + GFF2060 0.84 +0.1
942,907 - GFF2060 0.90 -0.8
942,921 + +0.6
942,921 + +1.0
942,921 + +1.2
942,921 + +1.0
942,921 + +0.2
942,976 - +0.1
943,215 - GFF2061 0.35 -0.9
943,271 + GFF2061 0.45 +1.0
943,272 - GFF2061 0.45 +0.2
943,272 - GFF2061 0.45 -0.4
943,272 - GFF2061 0.45 +0.4
943,388 + GFF2061 0.67 -0.2
943,547 + +0.2
943,548 - +0.1
943,575 + +0.1
943,575 + -0.3
943,576 - +0.4
944,009 + GFF2062 0.30 +0.6
944,010 - GFF2062 0.30 +0.6

Or see this region's nucleotide sequence