Experiment: Ying_all64 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2056 and GFF2057 are separated by 37 nucleotides GFF2057 and GFF2058 are separated by 3 nucleotides GFF2058 and GFF2059 are separated by 480 nucleotides
GFF2056 - Septum site-determining protein MinC, at 938,715 to 939,488
GFF2056
GFF2057 - Septum site-determining protein MinD, at 939,526 to 940,341
GFF2057
GFF2058 - Cell division topological specificity factor MinE, at 940,345 to 940,605
GFF2058
GFF2059 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 941,086 to 941,868
GFF2059
Position (kb) 939
940
941 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9 at 938.638 kb on + strand at 938.638 kb on + strand at 938.638 kb on + strand at 938.638 kb on + strand at 938.639 kb on - strand at 938.639 kb on - strand at 938.639 kb on - strand at 938.639 kb on - strand at 938.639 kb on - strand at 939.138 kb on - strand, within GFF2056 at 939.138 kb on - strand, within GFF2056 at 939.138 kb on - strand, within GFF2056 at 939.138 kb on - strand, within GFF2056 at 939.189 kb on + strand, within GFF2056 at 939.189 kb on + strand, within GFF2056 at 939.189 kb on + strand, within GFF2056 at 939.190 kb on - strand, within GFF2056 at 939.270 kb on + strand, within GFF2056 at 939.271 kb on - strand, within GFF2056 at 939.271 kb on - strand, within GFF2056 at 939.271 kb on - strand, within GFF2056 at 939.271 kb on - strand, within GFF2056 at 939.271 kb on - strand, within GFF2056 at 939.271 kb on - strand, within GFF2056 at 939.271 kb on - strand, within GFF2056 at 939.360 kb on + strand, within GFF2056 at 939.375 kb on + strand, within GFF2056 at 939.375 kb on + strand, within GFF2056 at 939.375 kb on + strand, within GFF2056 at 939.376 kb on - strand, within GFF2056 at 939.376 kb on - strand, within GFF2056 at 939.503 kb on - strand at 939.503 kb on - strand at 939.503 kb on - strand at 939.697 kb on + strand, within GFF2057 at 939.697 kb on + strand, within GFF2057 at 939.697 kb on + strand, within GFF2057 at 939.698 kb on - strand, within GFF2057 at 939.698 kb on - strand, within GFF2057 at 939.698 kb on - strand, within GFF2057 at 939.698 kb on - strand, within GFF2057 at 939.871 kb on + strand, within GFF2057 at 939.871 kb on + strand, within GFF2057 at 939.871 kb on + strand, within GFF2057 at 939.871 kb on + strand, within GFF2057 at 939.871 kb on + strand, within GFF2057 at 939.871 kb on + strand, within GFF2057 at 939.871 kb on + strand, within GFF2057 at 939.871 kb on + strand, within GFF2057 at 939.871 kb on + strand, within GFF2057 at 939.872 kb on - strand, within GFF2057 at 939.872 kb on - strand, within GFF2057 at 939.872 kb on - strand, within GFF2057 at 939.872 kb on - strand, within GFF2057 at 939.872 kb on - strand, within GFF2057 at 939.872 kb on - strand, within GFF2057 at 939.872 kb on - strand, within GFF2057 at 939.872 kb on - strand, within GFF2057 at 939.872 kb on - strand, within GFF2057 at 939.928 kb on + strand, within GFF2057 at 939.928 kb on + strand, within GFF2057 at 939.928 kb on + strand, within GFF2057 at 940.072 kb on + strand, within GFF2057 at 940.072 kb on + strand, within GFF2057 at 940.072 kb on + strand, within GFF2057 at 940.073 kb on - strand, within GFF2057 at 940.073 kb on - strand, within GFF2057 at 940.073 kb on - strand, within GFF2057 at 940.073 kb on - strand, within GFF2057 at 940.240 kb on + strand, within GFF2057 at 940.240 kb on + strand, within GFF2057 at 940.240 kb on + strand, within GFF2057 at 940.240 kb on + strand, within GFF2057 at 940.240 kb on + strand, within GFF2057 at 940.240 kb on + strand, within GFF2057 at 940.241 kb on - strand, within GFF2057 at 940.241 kb on - strand, within GFF2057 at 940.713 kb on + strand at 940.713 kb on + strand at 940.713 kb on + strand at 940.713 kb on + strand at 940.713 kb on + strand at 940.714 kb on - strand at 940.714 kb on - strand at 940.714 kb on - strand at 940.714 kb on - strand at 940.714 kb on - strand at 940.714 kb on - strand at 940.829 kb on + strand at 940.830 kb on - strand at 940.830 kb on - strand at 940.830 kb on - strand at 940.830 kb on - strand at 940.830 kb on - strand at 940.830 kb on - strand at 940.989 kb on + strand at 940.990 kb on - strand at 940.990 kb on - strand at 940.990 kb on - strand at 941.014 kb on + strand at 941.014 kb on + strand at 941.015 kb on - strand at 941.015 kb on - strand at 941.015 kb on - strand at 941.015 kb on - strand at 941.015 kb on - strand at 941.165 kb on - strand, within GFF2059 at 941.311 kb on + strand, within GFF2059 at 941.311 kb on + strand, within GFF2059 at 941.312 kb on - strand, within GFF2059
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3 remove 938,638 + +9.1 938,638 + -0.7 938,638 + +1.7 938,638 + +0.1 938,639 - -0.4 938,639 - -0.6 938,639 - -0.4 938,639 - +0.1 938,639 - +1.4 939,138 - GFF2056 0.55 +0.2 939,138 - GFF2056 0.55 +0.0 939,138 - GFF2056 0.55 +0.2 939,138 - GFF2056 0.55 -1.2 939,189 + GFF2056 0.61 +0.3 939,189 + GFF2056 0.61 +1.5 939,189 + GFF2056 0.61 -0.1 939,190 - GFF2056 0.61 +0.2 939,270 + GFF2056 0.72 -0.8 939,271 - GFF2056 0.72 +1.2 939,271 - GFF2056 0.72 +0.4 939,271 - GFF2056 0.72 -0.0 939,271 - GFF2056 0.72 +0.2 939,271 - GFF2056 0.72 +0.1 939,271 - GFF2056 0.72 -1.0 939,271 - GFF2056 0.72 +0.1 939,360 + GFF2056 0.83 -0.6 939,375 + GFF2056 0.85 +0.6 939,375 + GFF2056 0.85 -0.3 939,375 + GFF2056 0.85 -0.8 939,376 - GFF2056 0.85 -0.4 939,376 - GFF2056 0.85 +1.8 939,503 - +0.8 939,503 - -1.4 939,503 - -1.1 939,697 + GFF2057 0.21 +0.1 939,697 + GFF2057 0.21 +0.4 939,697 + GFF2057 0.21 +0.2 939,698 - GFF2057 0.21 -0.0 939,698 - GFF2057 0.21 -0.3 939,698 - GFF2057 0.21 -1.4 939,698 - GFF2057 0.21 -0.3 939,871 + GFF2057 0.42 +1.4 939,871 + GFF2057 0.42 +0.5 939,871 + GFF2057 0.42 -0.1 939,871 + GFF2057 0.42 +0.2 939,871 + GFF2057 0.42 -0.3 939,871 + GFF2057 0.42 -0.9 939,871 + GFF2057 0.42 -0.6 939,871 + GFF2057 0.42 -0.5 939,871 + GFF2057 0.42 +0.2 939,872 - GFF2057 0.42 +0.1 939,872 - GFF2057 0.42 +0.3 939,872 - GFF2057 0.42 -0.7 939,872 - GFF2057 0.42 -0.2 939,872 - GFF2057 0.42 -0.0 939,872 - GFF2057 0.42 -1.6 939,872 - GFF2057 0.42 -1.8 939,872 - GFF2057 0.42 +0.6 939,872 - GFF2057 0.42 -0.0 939,928 + GFF2057 0.49 +0.1 939,928 + GFF2057 0.49 +0.4 939,928 + GFF2057 0.49 +0.3 940,072 + GFF2057 0.67 -0.0 940,072 + GFF2057 0.67 -0.6 940,072 + GFF2057 0.67 -0.1 940,073 - GFF2057 0.67 +0.2 940,073 - GFF2057 0.67 +0.4 940,073 - GFF2057 0.67 -0.6 940,073 - GFF2057 0.67 +0.6 940,240 + GFF2057 0.88 +0.4 940,240 + GFF2057 0.88 -1.3 940,240 + GFF2057 0.88 -0.8 940,240 + GFF2057 0.88 -0.6 940,240 + GFF2057 0.88 +0.8 940,240 + GFF2057 0.88 -0.4 940,241 - GFF2057 0.88 -0.4 940,241 - GFF2057 0.88 -0.2 940,713 + +0.5 940,713 + +0.4 940,713 + -0.4 940,713 + -0.0 940,713 + -0.0 940,714 - -0.0 940,714 - -0.0 940,714 - +0.1 940,714 - -1.1 940,714 - -0.6 940,714 - +1.7 940,829 + +0.2 940,830 - -0.3 940,830 - -0.0 940,830 - +0.1 940,830 - +1.5 940,830 - -0.2 940,830 - +1.4 940,989 + -0.2 940,990 - -0.2 940,990 - -0.6 940,990 - -0.0 941,014 + -0.2 941,014 + -0.9 941,015 - +0.1 941,015 - -0.6 941,015 - +1.6 941,015 - -0.4 941,015 - -1.0 941,165 - GFF2059 0.10 -2.6 941,311 + GFF2059 0.29 -0.0 941,311 + GFF2059 0.29 +0.7 941,312 - GFF2059 0.29 -0.0
Or see this region's nucleotide sequence