Experiment: Ying_all64 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1991 and GFF1992 are separated by 47 nucleotides GFF1992 and GFF1993 overlap by 4 nucleotides GFF1993 and GFF1994 overlap by 4 nucleotides
GFF1991 - Possible gluconolactonase, at 868,581 to 869,621
GFF1991
GFF1992 - Transcriptional regulator, TetR family, at 869,669 to 870,406
GFF1992
GFF1993 - putative extracellular solute-binding protein, at 870,403 to 871,347
GFF1993
GFF1994 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 871,344 to 872,117
GFF1994
Position (kb) 869
870
871 Strain fitness (log2 ratio) -2
-1
0
1
2 at 869.082 kb on + strand, within GFF1991 at 869.083 kb on - strand, within GFF1991 at 869.178 kb on + strand, within GFF1991 at 869.178 kb on + strand, within GFF1991 at 869.178 kb on + strand, within GFF1991 at 869.178 kb on + strand, within GFF1991 at 869.179 kb on - strand, within GFF1991 at 869.179 kb on - strand, within GFF1991 at 869.179 kb on - strand, within GFF1991 at 869.544 kb on + strand at 869.620 kb on - strand at 869.620 kb on - strand at 869.672 kb on + strand at 869.672 kb on + strand at 869.673 kb on - strand at 869.798 kb on + strand, within GFF1992 at 869.798 kb on + strand, within GFF1992 at 869.864 kb on + strand, within GFF1992 at 869.865 kb on - strand, within GFF1992 at 869.865 kb on - strand, within GFF1992 at 869.867 kb on + strand, within GFF1992 at 869.868 kb on - strand, within GFF1992 at 869.868 kb on - strand, within GFF1992 at 869.868 kb on - strand, within GFF1992 at 870.050 kb on + strand, within GFF1992 at 870.050 kb on + strand, within GFF1992 at 870.050 kb on + strand, within GFF1992 at 870.050 kb on + strand, within GFF1992 at 870.050 kb on + strand, within GFF1992 at 870.050 kb on + strand, within GFF1992 at 870.081 kb on - strand, within GFF1992 at 870.081 kb on - strand, within GFF1992 at 870.200 kb on + strand, within GFF1992 at 870.200 kb on + strand, within GFF1992 at 870.502 kb on + strand, within GFF1993 at 870.554 kb on - strand, within GFF1993 at 870.667 kb on + strand, within GFF1993 at 870.667 kb on + strand, within GFF1993 at 870.667 kb on + strand, within GFF1993 at 870.668 kb on - strand, within GFF1993 at 870.668 kb on - strand, within GFF1993 at 870.668 kb on - strand, within GFF1993 at 870.880 kb on + strand, within GFF1993 at 870.881 kb on - strand, within GFF1993 at 870.881 kb on - strand, within GFF1993 at 870.881 kb on - strand, within GFF1993 at 871.007 kb on - strand, within GFF1993 at 871.007 kb on - strand, within GFF1993 at 871.018 kb on + strand, within GFF1993 at 871.021 kb on + strand, within GFF1993 at 871.021 kb on + strand, within GFF1993 at 871.021 kb on + strand, within GFF1993 at 871.192 kb on + strand, within GFF1993 at 871.192 kb on + strand, within GFF1993 at 871.193 kb on - strand, within GFF1993 at 871.193 kb on - strand, within GFF1993 at 871.193 kb on - strand, within GFF1993 at 871.193 kb on - strand, within GFF1993 at 871.193 kb on - strand, within GFF1993 at 871.273 kb on + strand at 871.273 kb on + strand at 871.358 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3 remove 869,082 + GFF1991 0.48 -0.0 869,083 - GFF1991 0.48 -0.5 869,178 + GFF1991 0.57 -2.5 869,178 + GFF1991 0.57 -0.0 869,178 + GFF1991 0.57 +0.1 869,178 + GFF1991 0.57 +0.5 869,179 - GFF1991 0.57 +0.0 869,179 - GFF1991 0.57 -0.5 869,179 - GFF1991 0.57 -0.2 869,544 + -0.6 869,620 - +0.2 869,620 - +0.0 869,672 + +0.4 869,672 + +0.1 869,673 - +0.4 869,798 + GFF1992 0.17 -0.5 869,798 + GFF1992 0.17 -0.0 869,864 + GFF1992 0.26 +0.1 869,865 - GFF1992 0.27 -1.6 869,865 - GFF1992 0.27 -0.9 869,867 + GFF1992 0.27 +0.5 869,868 - GFF1992 0.27 +0.2 869,868 - GFF1992 0.27 -0.3 869,868 - GFF1992 0.27 -0.3 870,050 + GFF1992 0.52 -0.0 870,050 + GFF1992 0.52 -0.6 870,050 + GFF1992 0.52 +1.0 870,050 + GFF1992 0.52 +0.1 870,050 + GFF1992 0.52 -0.2 870,050 + GFF1992 0.52 +1.5 870,081 - GFF1992 0.56 +0.4 870,081 - GFF1992 0.56 +2.0 870,200 + GFF1992 0.72 -1.0 870,200 + GFF1992 0.72 +0.3 870,502 + GFF1993 0.10 +0.8 870,554 - GFF1993 0.16 -0.5 870,667 + GFF1993 0.28 -2.0 870,667 + GFF1993 0.28 +0.1 870,667 + GFF1993 0.28 +0.0 870,668 - GFF1993 0.28 +0.6 870,668 - GFF1993 0.28 +1.4 870,668 - GFF1993 0.28 -0.4 870,880 + GFF1993 0.50 -0.5 870,881 - GFF1993 0.51 +0.3 870,881 - GFF1993 0.51 -0.0 870,881 - GFF1993 0.51 -1.2 871,007 - GFF1993 0.64 -0.3 871,007 - GFF1993 0.64 +0.3 871,018 + GFF1993 0.65 +0.1 871,021 + GFF1993 0.65 +1.0 871,021 + GFF1993 0.65 -0.2 871,021 + GFF1993 0.65 +2.0 871,192 + GFF1993 0.83 +0.1 871,192 + GFF1993 0.83 +1.4 871,193 - GFF1993 0.84 +1.0 871,193 - GFF1993 0.84 +1.2 871,193 - GFF1993 0.84 -0.0 871,193 - GFF1993 0.84 +0.3 871,193 - GFF1993 0.84 +0.1 871,273 + +0.1 871,273 + +0.2 871,358 + +0.7
Or see this region's nucleotide sequence