Experiment: Ying_all64 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1773 and GFF1774 are separated by 28 nucleotides GFF1774 and GFF1775 are separated by 339 nucleotides GFF1775 and GFF1776 overlap by 14 nucleotides GFF1776 and GFF1777 are separated by 42 nucleotides
GFF1773 - SoxH protein, homolog, at 638,654 to 639,619
GFF1773
GFF1774 - hypothetical protein, at 639,648 to 640,067
GFF1774
GFF1775 - hypothetical protein, at 640,407 to 641,333
GFF1775
GFF1776 - hypothetical protein, at 641,320 to 641,490
GFF1776
GFF1777 - Auxin Efflux Carrier, at 641,533 to 642,495
GFF1777
Position (kb) 640
641
642 Strain fitness (log2 ratio) -2
-1
0
1 at 639.440 kb on + strand, within GFF1773 at 639.441 kb on - strand, within GFF1773 at 639.441 kb on - strand, within GFF1773 at 639.506 kb on + strand, within GFF1773 at 639.506 kb on + strand, within GFF1773 at 639.506 kb on + strand, within GFF1773 at 639.507 kb on - strand, within GFF1773 at 639.575 kb on + strand at 639.575 kb on + strand at 639.576 kb on - strand at 639.576 kb on - strand at 639.584 kb on + strand at 639.584 kb on + strand at 639.584 kb on + strand at 639.584 kb on + strand at 639.585 kb on - strand at 639.585 kb on - strand at 639.585 kb on - strand at 639.585 kb on - strand at 639.585 kb on - strand at 639.585 kb on - strand at 639.618 kb on - strand at 639.618 kb on - strand at 639.725 kb on - strand, within GFF1774 at 639.996 kb on + strand, within GFF1774 at 639.996 kb on + strand, within GFF1774 at 640.000 kb on + strand, within GFF1774 at 640.000 kb on + strand, within GFF1774 at 640.000 kb on + strand, within GFF1774 at 640.000 kb on + strand, within GFF1774 at 640.001 kb on - strand, within GFF1774 at 640.750 kb on - strand, within GFF1775 at 640.781 kb on + strand, within GFF1775 at 640.781 kb on + strand, within GFF1775 at 640.781 kb on + strand, within GFF1775 at 641.104 kb on + strand, within GFF1775 at 641.104 kb on + strand, within GFF1775 at 641.105 kb on - strand, within GFF1775 at 641.105 kb on - strand, within GFF1775 at 641.105 kb on - strand, within GFF1775 at 641.125 kb on + strand, within GFF1775 at 641.795 kb on + strand, within GFF1777 at 641.796 kb on - strand, within GFF1777 at 642.290 kb on + strand, within GFF1777 at 642.290 kb on + strand, within GFF1777 at 642.290 kb on + strand, within GFF1777 at 642.290 kb on + strand, within GFF1777 at 642.291 kb on - strand, within GFF1777 at 642.291 kb on - strand, within GFF1777 at 642.291 kb on - strand, within GFF1777
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3 remove 639,440 + GFF1773 0.81 +0.5 639,441 - GFF1773 0.81 -0.0 639,441 - GFF1773 0.81 -1.3 639,506 + GFF1773 0.88 +0.8 639,506 + GFF1773 0.88 -0.0 639,506 + GFF1773 0.88 +1.0 639,507 - GFF1773 0.88 +0.1 639,575 + +1.0 639,575 + +1.0 639,576 - +1.6 639,576 - -0.3 639,584 + -0.9 639,584 + +0.5 639,584 + -0.3 639,584 + -0.2 639,585 - +1.2 639,585 - -0.2 639,585 - +1.0 639,585 - -0.1 639,585 - +0.3 639,585 - -0.2 639,618 - -0.3 639,618 - -1.0 639,725 - GFF1774 0.18 +0.5 639,996 + GFF1774 0.83 +0.2 639,996 + GFF1774 0.83 +0.4 640,000 + GFF1774 0.84 -0.2 640,000 + GFF1774 0.84 -1.0 640,000 + GFF1774 0.84 +0.0 640,000 + GFF1774 0.84 -0.6 640,001 - GFF1774 0.84 -0.4 640,750 - GFF1775 0.37 -0.0 640,781 + GFF1775 0.40 -0.1 640,781 + GFF1775 0.40 +0.5 640,781 + GFF1775 0.40 -0.4 641,104 + GFF1775 0.75 -0.2 641,104 + GFF1775 0.75 -0.3 641,105 - GFF1775 0.75 -0.3 641,105 - GFF1775 0.75 -0.8 641,105 - GFF1775 0.75 -1.8 641,125 + GFF1775 0.77 +0.0 641,795 + GFF1777 0.27 +0.1 641,796 - GFF1777 0.27 +0.0 642,290 + GFF1777 0.79 -0.5 642,290 + GFF1777 0.79 +1.6 642,290 + GFF1777 0.79 -1.8 642,290 + GFF1777 0.79 -0.0 642,291 - GFF1777 0.79 -0.6 642,291 - GFF1777 0.79 -0.5 642,291 - GFF1777 0.79 +0.3
Or see this region's nucleotide sequence