Experiment: Ying_all64 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1204 and GFF1205 are separated by 175 nucleotides GFF1205 and GFF1206 are separated by 35 nucleotides
GFF1204 - Regulatory protein of benzoate catabolism, at 65,939 to 66,886
GFF1204
GFF1205 - Benzaldehyde dehydrogenase, at 67,062 to 68,639
GFF1205
GFF1206 - Benzoate-CoA ligase (EC 6.2.1.25), at 68,675 to 70,246
GFF1206
Position (kb) 67
68
69 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 66.264 kb on + strand, within GFF1204 at 66.300 kb on + strand, within GFF1204 at 66.325 kb on - strand, within GFF1204 at 66.335 kb on + strand, within GFF1204 at 66.696 kb on + strand, within GFF1204 at 66.964 kb on + strand at 66.991 kb on - strand at 66.991 kb on - strand at 66.999 kb on + strand at 67.000 kb on - strand at 67.000 kb on - strand at 67.000 kb on - strand at 67.000 kb on - strand at 67.000 kb on - strand at 67.000 kb on - strand at 67.251 kb on + strand, within GFF1205 at 67.252 kb on - strand, within GFF1205 at 67.315 kb on - strand, within GFF1205 at 67.317 kb on + strand, within GFF1205 at 67.317 kb on + strand, within GFF1205 at 67.318 kb on - strand, within GFF1205 at 67.318 kb on - strand, within GFF1205 at 67.398 kb on + strand, within GFF1205 at 67.399 kb on + strand, within GFF1205 at 67.399 kb on - strand, within GFF1205 at 67.834 kb on + strand, within GFF1205 at 68.298 kb on + strand, within GFF1205 at 68.299 kb on - strand, within GFF1205 at 68.320 kb on - strand, within GFF1205 at 68.365 kb on - strand, within GFF1205 at 68.559 kb on + strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.560 kb on - strand at 68.634 kb on + strand at 68.634 kb on + strand at 68.634 kb on + strand at 68.634 kb on + strand at 68.634 kb on + strand at 68.792 kb on + strand at 68.976 kb on - strand, within GFF1206 at 68.976 kb on - strand, within GFF1206 at 68.981 kb on + strand, within GFF1206 at 68.981 kb on + strand, within GFF1206 at 68.981 kb on + strand, within GFF1206 at 68.982 kb on - strand, within GFF1206 at 68.982 kb on - strand, within GFF1206 at 68.982 kb on - strand, within GFF1206 at 68.982 kb on - strand, within GFF1206 at 68.982 kb on - strand, within GFF1206 at 68.982 kb on - strand, within GFF1206 at 68.982 kb on - strand, within GFF1206 at 69.221 kb on + strand, within GFF1206 at 69.221 kb on + strand, within GFF1206 at 69.222 kb on - strand, within GFF1206 at 69.272 kb on - strand, within GFF1206 at 69.278 kb on + strand, within GFF1206 at 69.278 kb on - strand, within GFF1206 at 69.279 kb on - strand, within GFF1206 at 69.296 kb on + strand, within GFF1206 at 69.296 kb on + strand, within GFF1206 at 69.297 kb on - strand, within GFF1206 at 69.488 kb on + strand, within GFF1206 at 69.489 kb on - strand, within GFF1206
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3 remove 66,264 + GFF1204 0.34 -3.7 66,300 + GFF1204 0.38 -2.2 66,325 - GFF1204 0.41 -2.0 66,335 + GFF1204 0.42 -1.1 66,696 + GFF1204 0.80 -1.1 66,964 + -0.7 66,991 - -0.5 66,991 - +0.4 66,999 + -0.3 67,000 - +0.0 67,000 - +1.6 67,000 - -0.1 67,000 - +0.1 67,000 - +0.6 67,000 - +0.0 67,251 + GFF1205 0.12 +0.6 67,252 - GFF1205 0.12 +0.3 67,315 - GFF1205 0.16 -0.1 67,317 + GFF1205 0.16 -0.0 67,317 + GFF1205 0.16 -0.7 67,318 - GFF1205 0.16 -0.4 67,318 - GFF1205 0.16 +0.1 67,398 + GFF1205 0.21 -0.3 67,399 + GFF1205 0.21 -0.1 67,399 - GFF1205 0.21 +0.4 67,834 + GFF1205 0.49 +0.9 68,298 + GFF1205 0.78 -0.1 68,299 - GFF1205 0.78 -0.4 68,320 - GFF1205 0.80 -0.1 68,365 - GFF1205 0.83 +0.2 68,559 + -0.5 68,560 - -0.1 68,560 - +1.0 68,560 - +0.1 68,634 + -0.5 68,634 + +0.5 68,634 + +0.1 68,634 + -0.1 68,634 + -0.3 68,792 + -0.2 68,976 - GFF1206 0.19 +0.1 68,976 - GFF1206 0.19 +0.9 68,981 + GFF1206 0.19 +0.1 68,981 + GFF1206 0.19 +0.2 68,981 + GFF1206 0.19 -0.1 68,982 - GFF1206 0.20 +0.4 68,982 - GFF1206 0.20 +0.3 68,982 - GFF1206 0.20 -0.1 68,982 - GFF1206 0.20 -0.9 68,982 - GFF1206 0.20 -0.1 68,982 - GFF1206 0.20 -0.5 68,982 - GFF1206 0.20 +0.8 69,221 + GFF1206 0.35 +1.2 69,221 + GFF1206 0.35 +0.4 69,222 - GFF1206 0.35 -0.3 69,272 - GFF1206 0.38 -0.1 69,278 + GFF1206 0.38 +1.6 69,278 - GFF1206 0.38 -0.2 69,279 - GFF1206 0.38 +0.3 69,296 + GFF1206 0.40 -0.2 69,296 + GFF1206 0.40 -0.1 69,297 - GFF1206 0.40 +0.3 69,488 + GFF1206 0.52 -0.6 69,489 - GFF1206 0.52 -1.1
Or see this region's nucleotide sequence