Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1088

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
3,372	+				+0.6
3,372	+				+0.2
3,372	+				-0.1
3,372	+				+0.4
3,372	+				-0.1
3,372	+				+0.0
3,372	+				-0.2
3,372	+				-1.3
3,373	-				+0.1
3,373	-				+0.1
3,373	-				-0.3
3,373	-				+0.1
3,373	-				-0.2
3,373	-				-0.3
3,373	-				+1.4
3,373	-				+0.4
3,373	-				+0.2
3,373	-				-0.1
3,373	-				-0.1
3,373	-				+1.7
3,373	-				-0.2
3,373	-				-0.2
3,396	+				+0.9
3,396	+				-0.3
3,396	+				+0.5
3,396	+				-0.4
3,396	+				-0.8
3,397	-				+0.1
3,544	+				+0.1
3,544	+				+0.3
3,544	+				+0.8
3,558	-				+0.8
3,620	-				-0.3
3,628	+				-0.4
3,665	+				-0.4
3,665	+				-0.3
3,665	+				-0.3
3,665	+				-0.1
3,712	-				+0.1
3,716	+				+0.1
3,716	+				+1.6
3,716	+				-0.4
3,716	+				+0.0
3,716	+				+0.4
3,716	+				-0.3
3,716	+				+1.2
3,717	-				-0.4
3,717	-				-0.8
3,717	-				+2.8
3,717	-				-0.2
3,717	-				-0.2
3,717	-				-0.0
3,717	-				+0.3
3,860	+		GFF1088	0.35	+1.2
3,861	-		GFF1088	0.36	-1.4
3,939	+		GFF1088	0.60	+0.4
3,944	+		GFF1088	0.62	+0.4
3,944	+		GFF1088	0.62	+1.3
3,945	-		GFF1088	0.62	+0.2
3,945	-		GFF1088	0.62	-1.1
4,039	+				-0.5
4,053	-				+1.0
4,214	+		GFF1089	0.52	-0.4
4,214	+		GFF1089	0.52	+0.2
4,214	+		GFF1089	0.52	-0.7
4,214	+		GFF1089	0.52	-0.2
4,214	+		GFF1089	0.52	-0.3
4,214	+		GFF1089	0.52	-0.1
4,214	+		GFF1089	0.52	+0.6
4,215	-		GFF1089	0.52	+0.5
4,215	-		GFF1089	0.52	-0.7
4,313	+		GFF1089	0.88	+0.3
4,314	-		GFF1089	0.89	-0.9
4,314	-		GFF1089	0.89	-0.2
4,314	-		GFF1089	0.89	+0.8
4,634	+				+0.0
4,634	+				+0.4
4,634	+				-0.2
4,634	+				-1.5
4,635	-				-0.2
4,635	-				-1.2
4,635	-				+0.4
4,635	-				+0.0
4,635	-				-2.0
4,635	-				+0.5
4,635	-				-0.3
4,635	-				-1.1
4,635	-				+0.3
4,635	-				-0.3
4,668	+				+0.2
4,669	-				-0.1
4,669	-				-1.0
4,669	-				+1.0
4,690	+				+0.2
4,690	+				+1.0
4,690	+				+0.1
4,690	+				-2.6
4,691	-				+0.8
4,691	-				+1.2
4,741	-				-0.8
4,741	-				-0.3
4,758	+				+0.1
4,759	-				+0.1
4,759	-				-0.3
4,759	-				-0.1
4,770	+				-0.0
4,770	+				-0.3
4,770	+				-0.2
4,770	+				+0.0
4,770	+				+0.1
4,770	+				+0.2
4,771	-				-0.0
4,771	-				-0.6
4,771	-				-0.6
4,771	-				+0.1
4,771	-				+0.1
4,821	-				+0.1
4,851	-				-0.6
4,910	+				+0.0
4,910	+				-1.4
4,911	-				+0.1
4,930	+				-0.9
4,930	+				-0.0
4,972	-				-0.2
5,060	+				+0.6
5,060	+				-0.5
5,060	+				-2.2
5,060	+				-0.4
5,061	-				+0.3
5,061	-				-0.2
5,061	-				-1.2
5,061	-				-0.0
5,061	-				-0.7
5,061	-				-0.4
5,061	-				+0.6
5,063	+				-1.2
5,063	+				+0.5