Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1086

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
756	+				-0.0
757	-				-0.1
766	+				-0.3
767	-				-0.4
767	-				-0.4
767	-				-0.4
786	+				+0.1
786	+				+0.7
801	+				-0.2
801	+				-0.4
935	+				-0.5
935	+				-0.3
935	+				-0.2
936	-				-0.4
936	-				-0.2
936	-				-0.4
936	-				+0.1
936	-				+0.4
939	+				-0.0
940	-				-0.2
940	-				-0.2
940	-				+0.3
940	-				+0.8
1,031	+				-0.3
1,032	-				+0.1
1,072	-				-0.5
1,072	-				-0.2
1,072	-				-0.2
1,139	+				-0.3
1,139	+				-0.4
1,139	+				-0.2
1,139	+				-0.7
1,140	-				+0.3
1,140	-				-0.1
1,273	+				-0.1
1,274	-				-1.3
1,274	-				+0.0
1,274	-				+0.2
1,274	-				+0.6
1,339	+				+1.6
1,340	-				-0.1
1,340	-				-1.8
1,340	-				+0.2
1,340	-				+0.5
1,373	+				-0.2
1,373	+				-0.1
1,374	-				+0.8
1,662	-		GFF1085	0.84	-0.2
1,769	-		GFF1086	0.28	+1.5
1,769	-		GFF1086	0.28	+0.3
1,769	-		GFF1086	0.28	-0.6
1,769	-		GFF1086	0.28	+1.0
1,769	-		GFF1086	0.28	+0.2
1,857	-		GFF1086	0.73	-0.6
1,965	-				-0.1
1,965	-				-0.1
2,053	-				-0.2
2,135	-				-0.3
2,135	-				+0.1
2,185	+				+0.2
2,186	-				-0.0
2,219	+				+0.2
2,219	+				-0.8
2,219	+				+0.2
2,220	-				+0.4
2,220	-				-0.8
2,223	+				-1.0
2,223	+				-0.1
2,223	+				-0.2
2,224	-				-0.5
2,224	-				+0.5
2,224	-				-0.8
2,226	+				+0.2
2,226	+				-0.1
2,226	+				+0.1
2,227	-				-1.6
2,227	-				-0.2
2,227	-				+0.1
2,230	+				+0.1
2,231	-				+0.2
2,231	-				-0.4
2,233	+				-0.4
2,234	-				+0.2
2,234	-				+0.1
2,241	+				-0.0
2,241	+				+0.2
2,241	+				+0.7
2,245	+				+0.1
2,245	+				+0.6
2,245	+				+0.0
2,245	+				+0.7
2,245	+				-0.3
2,245	+				-0.1
2,246	-				+0.2
2,246	-				-0.8
2,246	-				-0.4
2,246	-				+0.1
2,250	+				-0.3
2,250	+				+0.6
2,250	+				+0.4
2,250	+				+0.8
2,250	+				+0.0
2,251	-				-0.2
2,251	-				-0.7
2,253	+				-0.0
2,253	+				-0.2
2,268	+				+0.2
2,268	+				-0.0
2,268	+				-0.2
2,269	-				+0.2
2,293	-				-0.0
2,293	-				-1.8
2,293	-				+0.1
2,293	-				-0.2
2,293	-				+1.8
2,293	-				-2.1
2,321	+				-0.2
2,321	+				+0.4
2,321	+				+0.1
2,406	+		GFF1087	0.12	+0.3
2,406	+		GFF1087	0.12	+0.2
2,406	+		GFF1087	0.12	+0.1
2,419	+		GFF1087	0.13	+0.3
2,419	+		GFF1087	0.13	-0.2
2,419	+		GFF1087	0.13	-0.6
2,419	+		GFF1087	0.13	+0.5
2,419	+		GFF1087	0.13	+0.1
2,419	+		GFF1087	0.13	-0.0
2,419	+		GFF1087	0.13	+0.1
2,419	+		GFF1087	0.13	+0.5
2,420	-		GFF1087	0.13	+0.2
2,420	-		GFF1087	0.13	-0.4
2,420	-		GFF1087	0.13	-0.1
2,420	-		GFF1087	0.13	-0.2
2,585	+		GFF1087	0.28	+0.6
2,585	+		GFF1087	0.28	+1.0
2,585	+		GFF1087	0.28	+0.4
2,585	+		GFF1087	0.28	+0.2
2,585	+		GFF1087	0.28	+0.3
2,585	+		GFF1087	0.28	-0.2
2,586	-		GFF1087	0.28	-0.1
2,586	-		GFF1087	0.28	-0.7
2,586	-		GFF1087	0.28	-0.6