Experiment: Left Thigh 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS04795 and RR41_RS04800 are separated by 263 nucleotides RR41_RS04800 and RR41_RS04805 are separated by 1 nucleotides
RR41_RS04795: RR41_RS04795 - sulfate ABC transporter substrate-binding protein, at 990,149 to 991,156
_RS04795
RR41_RS04800: RR41_RS04800 - aminodeoxychorismate lyase, at 991,420 to 992,232
_RS04800
RR41_RS04805: RR41_RS04805 - endolytic transglycosylase MltG, at 992,234 to 993,304
_RS04805
Position (kb) 991
992
993 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 990.448 kb on + strand, within RR41_RS04795 at 990.452 kb on + strand, within RR41_RS04795 at 990.500 kb on + strand, within RR41_RS04795 at 990.500 kb on + strand, within RR41_RS04795 at 990.500 kb on + strand, within RR41_RS04795 at 990.500 kb on + strand, within RR41_RS04795 at 990.501 kb on - strand, within RR41_RS04795 at 990.530 kb on + strand, within RR41_RS04795 at 990.531 kb on - strand, within RR41_RS04795 at 990.531 kb on - strand, within RR41_RS04795 at 990.560 kb on - strand, within RR41_RS04795 at 990.588 kb on - strand, within RR41_RS04795 at 990.605 kb on - strand, within RR41_RS04795 at 990.643 kb on + strand, within RR41_RS04795 at 990.684 kb on + strand, within RR41_RS04795 at 990.685 kb on - strand, within RR41_RS04795 at 990.727 kb on + strand, within RR41_RS04795 at 990.727 kb on + strand, within RR41_RS04795 at 990.749 kb on + strand, within RR41_RS04795 at 990.750 kb on - strand, within RR41_RS04795 at 990.767 kb on - strand, within RR41_RS04795 at 990.817 kb on - strand, within RR41_RS04795 at 990.817 kb on - strand, within RR41_RS04795 at 990.817 kb on - strand, within RR41_RS04795 at 990.909 kb on - strand, within RR41_RS04795 at 990.909 kb on - strand, within RR41_RS04795 at 990.942 kb on - strand, within RR41_RS04795 at 990.983 kb on - strand, within RR41_RS04795 at 991.017 kb on + strand, within RR41_RS04795 at 991.017 kb on + strand, within RR41_RS04795 at 991.018 kb on - strand, within RR41_RS04795 at 991.018 kb on - strand, within RR41_RS04795 at 991.047 kb on + strand, within RR41_RS04795 at 991.048 kb on - strand, within RR41_RS04795 at 991.048 kb on - strand, within RR41_RS04795 at 991.049 kb on + strand, within RR41_RS04795 at 991.049 kb on + strand, within RR41_RS04795 at 991.049 kb on + strand, within RR41_RS04795 at 991.050 kb on - strand, within RR41_RS04795 at 991.050 kb on - strand, within RR41_RS04795 at 991.116 kb on - strand at 991.116 kb on - strand at 991.162 kb on - strand at 991.303 kb on + strand at 991.304 kb on - strand at 991.304 kb on - strand at 991.328 kb on + strand at 991.384 kb on - strand at 991.403 kb on + strand at 991.415 kb on + strand at 991.448 kb on + strand at 991.525 kb on - strand, within RR41_RS04800 at 991.701 kb on + strand, within RR41_RS04800 at 991.701 kb on + strand, within RR41_RS04800 at 991.702 kb on - strand, within RR41_RS04800 at 991.725 kb on + strand, within RR41_RS04800 at 991.729 kb on + strand, within RR41_RS04800 at 991.729 kb on + strand, within RR41_RS04800 at 991.729 kb on + strand, within RR41_RS04800 at 991.729 kb on + strand, within RR41_RS04800 at 991.729 kb on + strand, within RR41_RS04800 at 991.730 kb on - strand, within RR41_RS04800 at 991.730 kb on - strand, within RR41_RS04800 at 991.730 kb on - strand, within RR41_RS04800 at 991.731 kb on + strand, within RR41_RS04800 at 991.731 kb on + strand, within RR41_RS04800 at 991.776 kb on + strand, within RR41_RS04800 at 991.776 kb on + strand, within RR41_RS04800 at 991.777 kb on - strand, within RR41_RS04800 at 991.779 kb on - strand, within RR41_RS04800 at 991.827 kb on - strand, within RR41_RS04800 at 991.862 kb on + strand, within RR41_RS04800 at 991.863 kb on - strand, within RR41_RS04800 at 991.869 kb on - strand, within RR41_RS04800 at 991.908 kb on - strand, within RR41_RS04800 at 991.919 kb on + strand, within RR41_RS04800 at 991.927 kb on + strand, within RR41_RS04800 at 991.929 kb on + strand, within RR41_RS04800 at 991.929 kb on + strand, within RR41_RS04800 at 991.930 kb on - strand, within RR41_RS04800 at 991.950 kb on + strand, within RR41_RS04800 at 992.078 kb on + strand, within RR41_RS04800 at 993.174 kb on + strand, within RR41_RS04805 at 993.200 kb on + strand at 993.200 kb on + strand at 993.200 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Left Thigh 4 remove 990,448 + RR41_RS04795 0.30 +0.1 990,452 + RR41_RS04795 0.30 -1.5 990,500 + RR41_RS04795 0.35 -0.5 990,500 + RR41_RS04795 0.35 -0.7 990,500 + RR41_RS04795 0.35 +0.3 990,500 + RR41_RS04795 0.35 -1.9 990,501 - RR41_RS04795 0.35 -0.7 990,530 + RR41_RS04795 0.38 -1.5 990,531 - RR41_RS04795 0.38 -1.3 990,531 - RR41_RS04795 0.38 +1.4 990,560 - RR41_RS04795 0.41 -1.5 990,588 - RR41_RS04795 0.44 -2.9 990,605 - RR41_RS04795 0.45 -1.9 990,643 + RR41_RS04795 0.49 -0.5 990,684 + RR41_RS04795 0.53 +1.1 990,685 - RR41_RS04795 0.53 -0.5 990,727 + RR41_RS04795 0.57 -2.3 990,727 + RR41_RS04795 0.57 +2.8 990,749 + RR41_RS04795 0.60 +1.1 990,750 - RR41_RS04795 0.60 -3.1 990,767 - RR41_RS04795 0.61 +0.5 990,817 - RR41_RS04795 0.66 +1.5 990,817 - RR41_RS04795 0.66 +4.3 990,817 - RR41_RS04795 0.66 +2.1 990,909 - RR41_RS04795 0.75 +1.1 990,909 - RR41_RS04795 0.75 +0.8 990,942 - RR41_RS04795 0.79 +0.6 990,983 - RR41_RS04795 0.83 -0.9 991,017 + RR41_RS04795 0.86 +2.2 991,017 + RR41_RS04795 0.86 -1.9 991,018 - RR41_RS04795 0.86 -2.3 991,018 - RR41_RS04795 0.86 -0.8 991,047 + RR41_RS04795 0.89 -1.1 991,048 - RR41_RS04795 0.89 -1.9 991,048 - RR41_RS04795 0.89 -0.5 991,049 + RR41_RS04795 0.89 +1.6 991,049 + RR41_RS04795 0.89 -0.9 991,049 + RR41_RS04795 0.89 +0.7 991,050 - RR41_RS04795 0.89 +1.1 991,050 - RR41_RS04795 0.89 -0.1 991,116 - +1.6 991,116 - -0.9 991,162 - -1.4 991,303 + +0.1 991,304 - -1.5 991,304 - -2.5 991,328 + -2.5 991,384 - -1.5 991,403 + +1.3 991,415 + +0.1 991,448 + -2.7 991,525 - RR41_RS04800 0.13 -1.9 991,701 + RR41_RS04800 0.35 -2.7 991,701 + RR41_RS04800 0.35 -1.5 991,702 - RR41_RS04800 0.35 -0.3 991,725 + RR41_RS04800 0.38 +0.1 991,729 + RR41_RS04800 0.38 +1.1 991,729 + RR41_RS04800 0.38 -1.3 991,729 + RR41_RS04800 0.38 -1.7 991,729 + RR41_RS04800 0.38 -1.4 991,729 + RR41_RS04800 0.38 -1.9 991,730 - RR41_RS04800 0.38 +0.5 991,730 - RR41_RS04800 0.38 +0.6 991,730 - RR41_RS04800 0.38 +0.1 991,731 + RR41_RS04800 0.38 -2.5 991,731 + RR41_RS04800 0.38 -2.5 991,776 + RR41_RS04800 0.44 -2.7 991,776 + RR41_RS04800 0.44 -1.2 991,777 - RR41_RS04800 0.44 -2.3 991,779 - RR41_RS04800 0.44 -1.5 991,827 - RR41_RS04800 0.50 +0.1 991,862 + RR41_RS04800 0.54 -1.2 991,863 - RR41_RS04800 0.54 -0.9 991,869 - RR41_RS04800 0.55 -3.4 991,908 - RR41_RS04800 0.60 -1.5 991,919 + RR41_RS04800 0.61 -1.9 991,927 + RR41_RS04800 0.62 +0.1 991,929 + RR41_RS04800 0.63 -1.9 991,929 + RR41_RS04800 0.63 -1.5 991,930 - RR41_RS04800 0.63 -0.5 991,950 + RR41_RS04800 0.65 +0.1 992,078 + RR41_RS04800 0.81 -1.9 993,174 + RR41_RS04805 0.88 +0.1 993,200 + +1.1 993,200 + -0.9 993,200 + +1.5
Or see this region's nucleotide sequence