Experiment: Left Thigh 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS19135 and RR41_RS00565 are separated by 102 nucleotides RR41_RS00565 and RR41_RS00570 overlap by 1 nucleotides RR41_RS00570 and RR41_RS00575 are separated by 141 nucleotides
RR41_RS19135: RR41_RS19135 - IS4-like element ISAba1 family transposase, at 120,775 to 121,866
_RS19135
RR41_RS00565: RR41_RS00565 - aminoglycoside O-phosphotransferase APH(3'')-Ib, at 121,969 to 122,772
_RS00565
RR41_RS00570: RR41_RS00570 - aminoglycoside O-phosphotransferase APH(6)-Id, at 122,772 to 123,608
_RS00570
RR41_RS00575: RR41_RS00575 - hypothetical protein, at 123,750 to 124,172
_RS00575
Position (kb) 121
122
123 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 120.978 kb on - strand, within RR41_RS19135 at 121.980 kb on + strand at 121.984 kb on - strand at 122.428 kb on - strand, within RR41_RS00565 at 122.428 kb on - strand, within RR41_RS00565 at 122.468 kb on + strand, within RR41_RS00565 at 122.499 kb on + strand, within RR41_RS00565 at 122.551 kb on - strand, within RR41_RS00565 at 122.551 kb on - strand, within RR41_RS00565 at 122.691 kb on - strand, within RR41_RS00565 at 122.700 kb on - strand at 122.700 kb on - strand at 122.740 kb on + strand at 122.740 kb on + strand at 122.741 kb on - strand at 122.741 kb on - strand at 122.741 kb on - strand at 122.741 kb on - strand at 122.909 kb on - strand, within RR41_RS00570 at 122.909 kb on - strand, within RR41_RS00570 at 122.943 kb on + strand, within RR41_RS00570 at 122.944 kb on - strand, within RR41_RS00570 at 122.950 kb on + strand, within RR41_RS00570 at 123.015 kb on + strand, within RR41_RS00570 at 123.091 kb on + strand, within RR41_RS00570 at 123.092 kb on - strand, within RR41_RS00570 at 123.105 kb on + strand, within RR41_RS00570 at 123.216 kb on + strand, within RR41_RS00570 at 123.216 kb on + strand, within RR41_RS00570 at 123.217 kb on - strand, within RR41_RS00570 at 123.217 kb on - strand, within RR41_RS00570 at 123.217 kb on - strand, within RR41_RS00570 at 123.217 kb on - strand, within RR41_RS00570 at 123.234 kb on - strand, within RR41_RS00570 at 123.277 kb on + strand, within RR41_RS00570 at 123.278 kb on - strand, within RR41_RS00570 at 123.278 kb on - strand, within RR41_RS00570 at 123.334 kb on + strand, within RR41_RS00570 at 123.334 kb on + strand, within RR41_RS00570 at 123.335 kb on - strand, within RR41_RS00570 at 123.335 kb on - strand, within RR41_RS00570 at 123.335 kb on - strand, within RR41_RS00570 at 123.380 kb on + strand, within RR41_RS00570 at 123.381 kb on - strand, within RR41_RS00570 at 123.381 kb on - strand, within RR41_RS00570 at 123.381 kb on - strand, within RR41_RS00570 at 123.387 kb on + strand, within RR41_RS00570 at 123.387 kb on + strand, within RR41_RS00570 at 123.387 kb on + strand, within RR41_RS00570 at 123.387 kb on + strand, within RR41_RS00570 at 123.508 kb on - strand, within RR41_RS00570 at 123.562 kb on + strand at 123.604 kb on - strand at 123.607 kb on - strand at 123.607 kb on - strand at 123.607 kb on - strand at 123.607 kb on - strand at 123.607 kb on - strand at 123.610 kb on + strand at 123.661 kb on + strand at 123.661 kb on + strand at 123.685 kb on - strand at 123.724 kb on - strand at 123.724 kb on - strand at 123.749 kb on + strand at 123.750 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Left Thigh 4 remove 120,978 - RR41_RS19135 0.19 +1.0 121,980 + -2.2 121,984 - +0.1 122,428 - RR41_RS00565 0.57 -0.2 122,428 - RR41_RS00565 0.57 -0.2 122,468 + RR41_RS00565 0.62 +1.7 122,499 + RR41_RS00565 0.66 +0.7 122,551 - RR41_RS00565 0.72 -0.5 122,551 - RR41_RS00565 0.72 -1.2 122,691 - RR41_RS00565 0.90 +1.0 122,700 - -0.6 122,700 - +0.5 122,740 + +1.3 122,740 + -0.4 122,741 - -0.8 122,741 - -0.2 122,741 - -0.8 122,741 - +4.9 122,909 - RR41_RS00570 0.16 -0.2 122,909 - RR41_RS00570 0.16 -1.2 122,943 + RR41_RS00570 0.20 -1.2 122,944 - RR41_RS00570 0.21 +0.5 122,950 + RR41_RS00570 0.21 +0.7 123,015 + RR41_RS00570 0.29 +0.5 123,091 + RR41_RS00570 0.38 +1.3 123,092 - RR41_RS00570 0.38 +3.0 123,105 + RR41_RS00570 0.40 -3.2 123,216 + RR41_RS00570 0.53 -0.2 123,216 + RR41_RS00570 0.53 -3.6 123,217 - RR41_RS00570 0.53 +0.5 123,217 - RR41_RS00570 0.53 +1.0 123,217 - RR41_RS00570 0.53 -0.2 123,217 - RR41_RS00570 0.53 -2.3 123,234 - RR41_RS00570 0.55 +0.8 123,277 + RR41_RS00570 0.60 -0.7 123,278 - RR41_RS00570 0.60 -1.2 123,278 - RR41_RS00570 0.60 -0.2 123,334 + RR41_RS00570 0.67 -0.2 123,334 + RR41_RS00570 0.67 +0.8 123,335 - RR41_RS00570 0.67 -0.3 123,335 - RR41_RS00570 0.67 -0.2 123,335 - RR41_RS00570 0.67 +3.7 123,380 + RR41_RS00570 0.73 +0.2 123,381 - RR41_RS00570 0.73 +0.6 123,381 - RR41_RS00570 0.73 +2.2 123,381 - RR41_RS00570 0.73 -2.6 123,387 + RR41_RS00570 0.73 -0.2 123,387 + RR41_RS00570 0.73 +2.6 123,387 + RR41_RS00570 0.73 -0.2 123,387 + RR41_RS00570 0.73 -0.2 123,508 - RR41_RS00570 0.88 +1.4 123,562 + +0.2 123,604 - -2.2 123,607 - +1.9 123,607 - -0.9 123,607 - +1.2 123,607 - +3.0 123,607 - +0.8 123,610 + -0.2 123,661 + +0.9 123,661 + -0.7 123,685 - -0.8 123,724 - +0.4 123,724 - +0.8 123,749 + +0.6 123,750 - -0.2
Or see this region's nucleotide sequence