Experiment: Pectin from apple; filtered 1 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS04765 and HMPREF1181_RS04770 are separated by 23 nucleotides HMPREF1181_RS04770 and HMPREF1181_RS04775 are separated by 72 nucleotides
HMPREF1181_RS04765: HMPREF1181_RS04765 - gliding motility-associated protein GldE, at 211,384 to 212,736
_RS04765
HMPREF1181_RS04770: HMPREF1181_RS04770 - single-stranded DNA-binding protein, at 212,760 to 213,215
_RS04770
HMPREF1181_RS04775: HMPREF1181_RS04775 - A/G-specific adenine glycosylase, at 213,288 to 214,328
_RS04775
Position (kb) 212
213
214 Strain fitness (log2 ratio) -1
0
1
2 at 211.923 kb on - strand, within HMPREF1181_RS04765 at 211.923 kb on - strand, within HMPREF1181_RS04765 at 211.977 kb on - strand, within HMPREF1181_RS04765 at 212.218 kb on - strand, within HMPREF1181_RS04765 at 212.381 kb on - strand, within HMPREF1181_RS04765 at 212.422 kb on - strand, within HMPREF1181_RS04765 at 212.446 kb on - strand, within HMPREF1181_RS04765 at 212.473 kb on - strand, within HMPREF1181_RS04765 at 212.677 kb on - strand at 212.750 kb on - strand at 212.750 kb on - strand at 212.850 kb on - strand, within HMPREF1181_RS04770 at 212.850 kb on - strand, within HMPREF1181_RS04770 at 212.850 kb on - strand, within HMPREF1181_RS04770 at 212.850 kb on - strand, within HMPREF1181_RS04770 at 213.258 kb on - strand at 213.291 kb on + strand at 213.422 kb on - strand, within HMPREF1181_RS04775 at 213.424 kb on - strand, within HMPREF1181_RS04775 at 213.472 kb on - strand, within HMPREF1181_RS04775 at 213.498 kb on - strand, within HMPREF1181_RS04775 at 213.636 kb on + strand, within HMPREF1181_RS04775 at 213.637 kb on - strand, within HMPREF1181_RS04775 at 213.640 kb on + strand, within HMPREF1181_RS04775 at 213.641 kb on - strand, within HMPREF1181_RS04775 at 213.641 kb on - strand, within HMPREF1181_RS04775 at 213.642 kb on + strand, within HMPREF1181_RS04775 at 213.643 kb on - strand, within HMPREF1181_RS04775 at 213.644 kb on + strand, within HMPREF1181_RS04775 at 213.651 kb on - strand, within HMPREF1181_RS04775 at 213.677 kb on + strand, within HMPREF1181_RS04775 at 213.678 kb on - strand, within HMPREF1181_RS04775 at 213.678 kb on - strand, within HMPREF1181_RS04775 at 213.731 kb on + strand, within HMPREF1181_RS04775 at 213.799 kb on - strand, within HMPREF1181_RS04775 at 213.800 kb on + strand, within HMPREF1181_RS04775 at 213.801 kb on - strand, within HMPREF1181_RS04775 at 213.849 kb on + strand, within HMPREF1181_RS04775 at 213.956 kb on + strand, within HMPREF1181_RS04775 at 213.956 kb on + strand, within HMPREF1181_RS04775 at 213.957 kb on - strand, within HMPREF1181_RS04775 at 213.957 kb on - strand, within HMPREF1181_RS04775 at 213.957 kb on - strand, within HMPREF1181_RS04775 at 213.957 kb on - strand, within HMPREF1181_RS04775 at 213.960 kb on - strand, within HMPREF1181_RS04775 at 213.961 kb on + strand, within HMPREF1181_RS04775 at 213.962 kb on - strand, within HMPREF1181_RS04775 at 213.966 kb on + strand, within HMPREF1181_RS04775 at 213.990 kb on - strand, within HMPREF1181_RS04775 at 213.990 kb on - strand, within HMPREF1181_RS04775 at 213.991 kb on + strand, within HMPREF1181_RS04775 at 214.111 kb on + strand, within HMPREF1181_RS04775 at 214.193 kb on - strand, within HMPREF1181_RS04775 at 214.200 kb on + strand, within HMPREF1181_RS04775
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; filtered 1 mg/mL (C) remove 211,923 - HMPREF1181_RS04765 0.40 -0.6 211,923 - HMPREF1181_RS04765 0.40 -0.8 211,977 - HMPREF1181_RS04765 0.44 +0.4 212,218 - HMPREF1181_RS04765 0.62 -0.1 212,381 - HMPREF1181_RS04765 0.74 +0.2 212,422 - HMPREF1181_RS04765 0.77 -0.5 212,446 - HMPREF1181_RS04765 0.78 -1.0 212,473 - HMPREF1181_RS04765 0.80 -0.3 212,677 - -0.8 212,750 - -0.3 212,750 - +0.7 212,850 - HMPREF1181_RS04770 0.20 -0.2 212,850 - HMPREF1181_RS04770 0.20 -0.2 212,850 - HMPREF1181_RS04770 0.20 -0.2 212,850 - HMPREF1181_RS04770 0.20 -0.3 213,258 - -0.1 213,291 + -0.4 213,422 - HMPREF1181_RS04775 0.13 +0.1 213,424 - HMPREF1181_RS04775 0.13 +0.3 213,472 - HMPREF1181_RS04775 0.18 +1.6 213,498 - HMPREF1181_RS04775 0.20 -1.5 213,636 + HMPREF1181_RS04775 0.33 +0.3 213,637 - HMPREF1181_RS04775 0.34 -0.4 213,640 + HMPREF1181_RS04775 0.34 -1.7 213,641 - HMPREF1181_RS04775 0.34 +0.8 213,641 - HMPREF1181_RS04775 0.34 -1.6 213,642 + HMPREF1181_RS04775 0.34 +2.5 213,643 - HMPREF1181_RS04775 0.34 +1.1 213,644 + HMPREF1181_RS04775 0.34 +0.1 213,651 - HMPREF1181_RS04775 0.35 -1.1 213,677 + HMPREF1181_RS04775 0.37 +0.6 213,678 - HMPREF1181_RS04775 0.37 -0.0 213,678 - HMPREF1181_RS04775 0.37 +1.2 213,731 + HMPREF1181_RS04775 0.43 -0.1 213,799 - HMPREF1181_RS04775 0.49 +0.7 213,800 + HMPREF1181_RS04775 0.49 -0.3 213,801 - HMPREF1181_RS04775 0.49 -0.4 213,849 + HMPREF1181_RS04775 0.54 +0.1 213,956 + HMPREF1181_RS04775 0.64 +2.3 213,956 + HMPREF1181_RS04775 0.64 +0.0 213,957 - HMPREF1181_RS04775 0.64 -0.0 213,957 - HMPREF1181_RS04775 0.64 +0.8 213,957 - HMPREF1181_RS04775 0.64 +0.9 213,957 - HMPREF1181_RS04775 0.64 +1.3 213,960 - HMPREF1181_RS04775 0.65 -0.4 213,961 + HMPREF1181_RS04775 0.65 -1.3 213,962 - HMPREF1181_RS04775 0.65 +0.0 213,966 + HMPREF1181_RS04775 0.65 +0.5 213,990 - HMPREF1181_RS04775 0.67 -0.8 213,990 - HMPREF1181_RS04775 0.67 +0.7 213,991 + HMPREF1181_RS04775 0.68 +0.6 214,111 + HMPREF1181_RS04775 0.79 -1.0 214,193 - HMPREF1181_RS04775 0.87 +0.1 214,200 + HMPREF1181_RS04775 0.88 +0.3
Or see this region's nucleotide sequence