Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF856 and GFF857 are separated by 108 nucleotides
GFF856 - hypothetical protein, at 574,259 to 574,993
GFF856
GFF857 - Histone-like protein, at 575,102 to 575,488
GFF857
Position (kb) 574
575 Strain fitness (log2 ratio) -2
-1
0
1
2 at 573.428 kb on + strand at 573.441 kb on + strand at 573.442 kb on - strand at 573.540 kb on + strand at 573.541 kb on - strand at 573.541 kb on - strand at 573.748 kb on - strand at 573.748 kb on - strand at 573.790 kb on + strand at 573.790 kb on + strand at 573.791 kb on - strand at 573.791 kb on - strand at 573.791 kb on - strand at 574.006 kb on + strand at 574.006 kb on + strand at 574.007 kb on - strand at 574.007 kb on - strand at 574.007 kb on - strand at 574.125 kb on - strand at 574.170 kb on + strand at 574.171 kb on - strand at 574.171 kb on - strand at 574.203 kb on + strand at 574.203 kb on + strand at 574.204 kb on - strand at 574.204 kb on - strand at 574.232 kb on + strand at 574.232 kb on + strand at 574.232 kb on + strand at 574.232 kb on + strand at 574.233 kb on - strand at 574.233 kb on - strand at 574.233 kb on - strand at 574.331 kb on + strand at 574.331 kb on + strand at 574.331 kb on + strand at 574.331 kb on + strand at 574.331 kb on + strand at 574.331 kb on + strand at 574.332 kb on - strand at 574.332 kb on - strand at 574.560 kb on - strand, within GFF856 at 574.625 kb on + strand, within GFF856 at 574.625 kb on + strand, within GFF856 at 574.626 kb on - strand, within GFF856 at 574.626 kb on - strand, within GFF856 at 574.626 kb on - strand, within GFF856 at 574.721 kb on + strand, within GFF856 at 574.878 kb on - strand, within GFF856 at 574.951 kb on + strand at 574.951 kb on + strand at 574.951 kb on + strand at 574.951 kb on + strand at 574.951 kb on + strand at 574.952 kb on - strand at 574.952 kb on - strand at 574.952 kb on - strand at 574.952 kb on - strand at 574.952 kb on - strand at 574.952 kb on - strand at 574.952 kb on - strand at 574.952 kb on - strand at 574.952 kb on - strand at 574.955 kb on + strand at 574.955 kb on + strand at 574.955 kb on + strand at 574.955 kb on + strand at 574.955 kb on + strand at 574.955 kb on + strand at 574.955 kb on + strand at 574.955 kb on + strand at 574.955 kb on + strand at 574.955 kb on + strand at 574.955 kb on + strand at 574.955 kb on + strand at 574.955 kb on + strand at 574.955 kb on + strand at 574.955 kb on + strand at 574.955 kb on + strand at 574.955 kb on + strand at 574.955 kb on + strand at 574.955 kb on + strand at 574.955 kb on + strand at 574.955 kb on + strand at 574.955 kb on + strand at 574.955 kb on + strand at 574.955 kb on + strand at 574.955 kb on + strand at 574.955 kb on + strand at 574.956 kb on - strand at 574.956 kb on - strand at 574.956 kb on - strand at 574.956 kb on - strand at 574.956 kb on - strand at 574.956 kb on - strand at 574.956 kb on - strand at 574.956 kb on - strand at 574.956 kb on - strand at 574.956 kb on - strand at 574.956 kb on - strand at 574.956 kb on - strand at 574.956 kb on - strand at 574.956 kb on - strand at 574.956 kb on - strand at 574.956 kb on - strand at 574.956 kb on - strand at 574.956 kb on - strand at 574.956 kb on - strand at 574.956 kb on - strand at 574.956 kb on - strand at 574.956 kb on - strand at 574.956 kb on - strand at 574.956 kb on - strand at 574.956 kb on - strand at 574.956 kb on - strand at 574.959 kb on + strand at 574.959 kb on + strand at 574.959 kb on + strand at 574.959 kb on + strand at 574.959 kb on + strand at 574.959 kb on + strand at 574.959 kb on + strand at 574.959 kb on + strand at 574.959 kb on + strand at 574.959 kb on + strand at 574.960 kb on - strand at 574.960 kb on - strand at 574.960 kb on - strand at 574.960 kb on - strand at 574.960 kb on - strand at 574.960 kb on - strand at 574.960 kb on - strand at 574.960 kb on - strand at 575.053 kb on - strand at 575.073 kb on + strand at 575.103 kb on + strand at 575.103 kb on + strand at 575.512 kb on + strand at 575.512 kb on + strand at 575.513 kb on - strand at 575.513 kb on - strand at 575.513 kb on - strand at 575.516 kb on + strand at 575.516 kb on + strand at 575.516 kb on + strand at 575.517 kb on - strand at 575.517 kb on - strand at 575.517 kb on - strand at 575.517 kb on - strand at 575.517 kb on - strand at 575.517 kb on - strand at 575.517 kb on - strand at 575.517 kb on - strand at 575.540 kb on + strand at 575.540 kb on + strand at 575.540 kb on + strand at 575.540 kb on + strand at 575.551 kb on + strand at 575.552 kb on - strand at 575.552 kb on - strand at 575.705 kb on + strand at 575.705 kb on + strand at 575.712 kb on + strand at 575.712 kb on + strand at 575.712 kb on + strand at 575.713 kb on - strand at 575.713 kb on - strand at 575.809 kb on + strand at 575.810 kb on - strand at 575.810 kb on - strand at 575.810 kb on - strand at 575.810 kb on - strand at 575.810 kb on - strand at 575.810 kb on - strand at 575.818 kb on + strand at 575.818 kb on + strand at 575.818 kb on + strand at 575.819 kb on - strand at 575.819 kb on - strand at 575.904 kb on + strand at 575.904 kb on + strand at 575.904 kb on + strand at 575.904 kb on + strand at 575.904 kb on + strand at 575.905 kb on - strand at 575.905 kb on - strand at 575.905 kb on - strand at 575.905 kb on - strand at 575.905 kb on - strand at 575.905 kb on - strand at 575.905 kb on - strand at 575.971 kb on + strand at 575.971 kb on + strand at 575.971 kb on + strand at 575.971 kb on + strand at 575.971 kb on + strand at 575.971 kb on + strand at 575.971 kb on + strand at 575.971 kb on + strand at 575.971 kb on + strand at 575.971 kb on + strand at 575.971 kb on + strand at 575.972 kb on - strand at 575.972 kb on - strand at 575.972 kb on - strand at 575.972 kb on - strand at 575.972 kb on - strand at 575.973 kb on + strand at 575.973 kb on + strand at 575.973 kb on + strand at 575.974 kb on - strand at 575.974 kb on - strand at 575.974 kb on - strand at 575.974 kb on - strand at 575.974 kb on - strand at 575.974 kb on - strand at 575.974 kb on - strand at 575.974 kb on - strand at 575.974 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 573,428 + -0.1 573,441 + -1.2 573,442 - +0.1 573,540 + -1.1 573,541 - -0.2 573,541 - -0.6 573,748 - -1.7 573,748 - -0.0 573,790 + -0.4 573,790 + -0.0 573,791 - +0.1 573,791 - -0.7 573,791 - -1.0 574,006 + -1.0 574,006 + -0.0 574,007 - -1.0 574,007 - -0.0 574,007 - -0.1 574,125 - +0.2 574,170 + -1.9 574,171 - +0.4 574,171 - -0.3 574,203 + +0.2 574,203 + +0.1 574,204 - -1.3 574,204 - +0.2 574,232 + +0.3 574,232 + +0.5 574,232 + -0.2 574,232 + +0.5 574,233 - +0.4 574,233 - -0.2 574,233 - +1.0 574,331 + -0.0 574,331 + -0.3 574,331 + +0.1 574,331 + +0.8 574,331 + -1.0 574,331 + -0.8 574,332 - +0.4 574,332 - +0.5 574,560 - GFF856 0.41 -1.3 574,625 + GFF856 0.50 +0.0 574,625 + GFF856 0.50 -0.4 574,626 - GFF856 0.50 -0.3 574,626 - GFF856 0.50 -0.9 574,626 - GFF856 0.50 -0.5 574,721 + GFF856 0.63 -0.2 574,878 - GFF856 0.84 +0.6 574,951 + +0.1 574,951 + -0.0 574,951 + -0.7 574,951 + +1.0 574,951 + +0.6 574,952 - +0.1 574,952 - -0.2 574,952 - -0.5 574,952 - +0.0 574,952 - -1.1 574,952 - +0.6 574,952 - -0.2 574,952 - +0.1 574,952 - +0.3 574,955 + +0.5 574,955 + -0.2 574,955 + -0.0 574,955 + +0.4 574,955 + +0.0 574,955 + -2.0 574,955 + +0.5 574,955 + +0.8 574,955 + -0.1 574,955 + -0.3 574,955 + +0.3 574,955 + -0.2 574,955 + -0.7 574,955 + +0.2 574,955 + +0.1 574,955 + +0.0 574,955 + +0.7 574,955 + +1.7 574,955 + -0.2 574,955 + -0.0 574,955 + -0.2 574,955 + +0.2 574,955 + -0.1 574,955 + -0.6 574,955 + -0.0 574,955 + -1.8 574,956 - +1.0 574,956 - -0.9 574,956 - +0.6 574,956 - -0.2 574,956 - +0.6 574,956 - +0.1 574,956 - +0.4 574,956 - -0.5 574,956 - +0.2 574,956 - +0.2 574,956 - +0.2 574,956 - +0.1 574,956 - -2.3 574,956 - +1.0 574,956 - +0.1 574,956 - +0.1 574,956 - +0.5 574,956 - +0.1 574,956 - +0.7 574,956 - -1.7 574,956 - +0.1 574,956 - +0.6 574,956 - +0.7 574,956 - -0.2 574,956 - -0.2 574,956 - -0.8 574,959 + +0.5 574,959 + -0.0 574,959 + +0.6 574,959 + -0.6 574,959 + -0.1 574,959 + +0.6 574,959 + +0.2 574,959 + -0.2 574,959 + +0.9 574,959 + -0.7 574,960 - -0.3 574,960 - +0.8 574,960 - +0.5 574,960 - +0.0 574,960 - +1.0 574,960 - +0.4 574,960 - +1.0 574,960 - -0.1 575,053 - -1.3 575,073 + +0.0 575,103 + -0.6 575,103 + -0.9 575,512 + -0.8 575,512 + +1.0 575,513 - -0.0 575,513 - +0.4 575,513 - -0.3 575,516 + -0.2 575,516 + -0.1 575,516 + -0.0 575,517 - -0.0 575,517 - -0.3 575,517 - -0.2 575,517 - -0.2 575,517 - +0.4 575,517 - -0.5 575,517 - -0.5 575,517 - -0.3 575,540 + +0.1 575,540 + +0.3 575,540 + +0.4 575,540 + +0.1 575,551 + +0.5 575,552 - -0.5 575,552 - +0.2 575,705 + +0.4 575,705 + +0.1 575,712 + -0.6 575,712 + -0.0 575,712 + -0.6 575,713 - +2.3 575,713 - -0.4 575,809 + -0.6 575,810 - -0.4 575,810 - -0.2 575,810 - +1.0 575,810 - -0.0 575,810 - -0.4 575,810 - -0.6 575,818 + -0.0 575,818 + -0.2 575,818 + -0.0 575,819 - -0.4 575,819 - +1.1 575,904 + -0.7 575,904 + +1.4 575,904 + +0.3 575,904 + +0.4 575,904 + -0.0 575,905 - -1.0 575,905 - +0.7 575,905 - -0.3 575,905 - +0.3 575,905 - -0.0 575,905 - -0.1 575,905 - +0.2 575,971 + +0.0 575,971 + +0.1 575,971 + +0.2 575,971 + -0.1 575,971 + +0.0 575,971 + +1.2 575,971 + +0.1 575,971 + +0.5 575,971 + +0.2 575,971 + +0.0 575,971 + +0.3 575,972 - +0.1 575,972 - +0.2 575,972 - +0.4 575,972 - -0.0 575,972 - +0.3 575,973 + +0.0 575,973 + +0.4 575,973 + +0.3 575,974 - +0.9 575,974 - -0.4 575,974 - -0.0 575,974 - -0.3 575,974 - -1.3 575,974 - -0.7 575,974 - -0.1 575,974 - -0.4 575,974 - -0.1
Or see this region's nucleotide sequence