Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF833 and GFF834 are separated by 807 nucleotides
GFF833 - hypothetical protein, at 531,906 to 532,022
GFF833
GFF834 - hypothetical protein, at 532,830 to 533,018
GFF834
Position (kb) 532
533
534 Strain fitness (log2 ratio) -2
-1
0
1
2 at 531.855 kb on + strand at 531.855 kb on + strand at 531.858 kb on + strand at 531.859 kb on - strand at 531.986 kb on - strand, within GFF833 at 531.986 kb on - strand, within GFF833 at 531.986 kb on - strand, within GFF833 at 532.396 kb on - strand at 532.539 kb on + strand at 532.686 kb on + strand at 532.686 kb on + strand at 532.686 kb on + strand at 532.686 kb on + strand at 532.687 kb on - strand at 532.780 kb on + strand at 532.780 kb on + strand at 532.780 kb on + strand at 532.780 kb on + strand at 532.780 kb on + strand at 532.781 kb on - strand at 532.796 kb on + strand at 532.796 kb on + strand at 532.796 kb on + strand at 532.797 kb on - strand at 532.897 kb on + strand, within GFF834 at 532.897 kb on + strand, within GFF834 at 532.968 kb on + strand, within GFF834 at 533.128 kb on + strand at 533.128 kb on + strand at 533.128 kb on + strand at 533.128 kb on + strand at 533.128 kb on + strand at 533.129 kb on - strand at 533.129 kb on - strand at 533.195 kb on - strand at 533.279 kb on + strand at 533.280 kb on - strand at 533.280 kb on - strand at 533.305 kb on + strand at 533.305 kb on + strand at 533.305 kb on + strand at 533.306 kb on - strand at 533.306 kb on - strand at 533.421 kb on - strand at 533.513 kb on + strand at 533.513 kb on + strand at 533.701 kb on + strand at 533.731 kb on + strand at 533.731 kb on + strand at 533.731 kb on + strand at 533.732 kb on - strand at 533.732 kb on - strand at 533.732 kb on - strand at 533.732 kb on - strand at 533.732 kb on - strand at 533.732 kb on - strand at 533.732 kb on - strand at 533.732 kb on - strand at 533.844 kb on + strand at 533.845 kb on - strand at 533.915 kb on + strand at 533.916 kb on - strand at 533.944 kb on - strand at 533.965 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 531,855 + -2.0 531,855 + -1.3 531,858 + -1.0 531,859 - -0.8 531,986 - GFF833 0.68 +1.0 531,986 - GFF833 0.68 +0.4 531,986 - GFF833 0.68 +0.0 532,396 - -0.3 532,539 + -0.3 532,686 + -0.6 532,686 + +0.2 532,686 + +0.2 532,686 + +0.4 532,687 - +0.7 532,780 + -0.0 532,780 + -0.1 532,780 + +0.1 532,780 + -2.2 532,780 + -2.7 532,781 - +1.7 532,796 + -0.2 532,796 + +0.7 532,796 + +0.6 532,797 - -0.4 532,897 + GFF834 0.35 +1.0 532,897 + GFF834 0.35 -0.6 532,968 + GFF834 0.73 -0.1 533,128 + +2.3 533,128 + +0.2 533,128 + -0.2 533,128 + -1.0 533,128 + -1.0 533,129 - -0.2 533,129 - -0.2 533,195 - +1.0 533,279 + +0.4 533,280 - -0.0 533,280 - -0.3 533,305 + -0.2 533,305 + +1.4 533,305 + +1.1 533,306 - +0.2 533,306 - -0.3 533,421 - +0.1 533,513 + -0.0 533,513 + +0.0 533,701 + -0.2 533,731 + +0.2 533,731 + +0.7 533,731 + -0.2 533,732 - +0.0 533,732 - -0.2 533,732 - -0.2 533,732 - -1.1 533,732 - -0.0 533,732 - -0.4 533,732 - +0.4 533,732 - -0.6 533,844 + +0.5 533,845 - -0.6 533,915 + +0.2 533,916 - -0.3 533,944 - -0.2 533,965 + -1.5
Or see this region's nucleotide sequence