Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7 and GFF8 overlap by 4 nucleotides GFF8 and GFF9 overlap by 1 nucleotides GFF9 and GFF10 are separated by 9 nucleotides
GFF7 - hypothetical protein, at 4,767 to 5,771
GFF7
GFF8 - Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB, at 5,768 to 6,532
GFF8
GFF9 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 6,532 to 7,299
GFF9
GFF10 - N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47), at 7,309 to 8,517
GFF10
Position (kb) 5
6
7 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4.866 kb on + strand at 4.912 kb on - strand, within GFF7 at 4.912 kb on - strand, within GFF7 at 4.922 kb on - strand, within GFF7 at 5.043 kb on + strand, within GFF7 at 5.043 kb on + strand, within GFF7 at 5.043 kb on + strand, within GFF7 at 5.044 kb on - strand, within GFF7 at 5.044 kb on - strand, within GFF7 at 5.044 kb on - strand, within GFF7 at 5.418 kb on + strand, within GFF7 at 5.418 kb on + strand, within GFF7 at 5.419 kb on - strand, within GFF7 at 5.419 kb on - strand, within GFF7 at 5.460 kb on + strand, within GFF7 at 5.885 kb on + strand, within GFF8 at 6.015 kb on - strand, within GFF8 at 6.592 kb on + strand at 6.592 kb on + strand at 6.592 kb on + strand at 6.593 kb on - strand at 6.593 kb on - strand at 6.658 kb on + strand, within GFF9 at 6.658 kb on + strand, within GFF9 at 6.659 kb on - strand, within GFF9 at 6.659 kb on - strand, within GFF9 at 6.685 kb on + strand, within GFF9 at 6.686 kb on - strand, within GFF9 at 6.709 kb on + strand, within GFF9 at 6.710 kb on - strand, within GFF9 at 6.710 kb on - strand, within GFF9 at 6.940 kb on + strand, within GFF9 at 6.940 kb on + strand, within GFF9 at 6.941 kb on - strand, within GFF9 at 6.941 kb on - strand, within GFF9 at 6.941 kb on - strand, within GFF9 at 6.941 kb on - strand, within GFF9 at 7.486 kb on + strand, within GFF10 at 7.487 kb on - strand, within GFF10
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 4,866 + +0.2 4,912 - GFF7 0.14 +0.0 4,912 - GFF7 0.14 +0.7 4,922 - GFF7 0.15 +0.3 5,043 + GFF7 0.27 +0.1 5,043 + GFF7 0.27 +0.4 5,043 + GFF7 0.27 +0.9 5,044 - GFF7 0.28 +0.1 5,044 - GFF7 0.28 -0.2 5,044 - GFF7 0.28 -0.6 5,418 + GFF7 0.65 +0.3 5,418 + GFF7 0.65 +1.0 5,419 - GFF7 0.65 +0.4 5,419 - GFF7 0.65 +2.0 5,460 + GFF7 0.69 -1.8 5,885 + GFF8 0.15 +1.2 6,015 - GFF8 0.32 -0.2 6,592 + +0.6 6,592 + -0.7 6,592 + +0.3 6,593 - -0.5 6,593 - -0.3 6,658 + GFF9 0.16 -1.0 6,658 + GFF9 0.16 +0.3 6,659 - GFF9 0.17 +0.1 6,659 - GFF9 0.17 +0.2 6,685 + GFF9 0.20 -0.3 6,686 - GFF9 0.20 +0.2 6,709 + GFF9 0.23 +0.0 6,710 - GFF9 0.23 +2.0 6,710 - GFF9 0.23 +1.4 6,940 + GFF9 0.53 -0.4 6,940 + GFF9 0.53 -0.6 6,941 - GFF9 0.53 +0.9 6,941 - GFF9 0.53 -1.6 6,941 - GFF9 0.53 -0.0 6,941 - GFF9 0.53 +0.0 7,486 + GFF10 0.15 +0.2 7,487 - GFF10 0.15 +1.5
Or see this region's nucleotide sequence