Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF715 and GFF716 are separated by 331 nucleotides GFF716 and GFF717 are separated by 305 nucleotides GFF717 and GFF718 are separated by 111 nucleotides
GFF715 - putative oxygenase, at 394,922 to 396,655
GFF715
GFF716 - Glyoxalase family protein, at 396,987 to 397,601
GFF716
GFF717 - Rubrerythrin, at 397,907 to 398,329
GFF717
GFF718 - Fe-S oxidoreductase-like protein in Rubrerythrin cluster, at 398,441 to 399,799
GFF718
Position (kb) 396
397
398 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 396.070 kb on - strand, within GFF715 at 396.070 kb on - strand, within GFF715 at 396.201 kb on + strand, within GFF715 at 396.202 kb on - strand, within GFF715 at 396.277 kb on - strand, within GFF715 at 396.387 kb on + strand, within GFF715 at 396.387 kb on + strand, within GFF715 at 396.388 kb on - strand, within GFF715 at 396.388 kb on - strand, within GFF715 at 396.588 kb on + strand at 396.588 kb on + strand at 396.612 kb on + strand at 396.612 kb on + strand at 396.613 kb on - strand at 397.204 kb on + strand, within GFF716 at 397.204 kb on + strand, within GFF716 at 397.204 kb on + strand, within GFF716 at 397.205 kb on - strand, within GFF716 at 397.205 kb on - strand, within GFF716 at 397.205 kb on - strand, within GFF716 at 397.205 kb on - strand, within GFF716 at 397.205 kb on - strand, within GFF716 at 397.205 kb on - strand, within GFF716 at 397.426 kb on + strand, within GFF716 at 397.435 kb on + strand, within GFF716 at 397.436 kb on - strand, within GFF716 at 397.436 kb on - strand, within GFF716 at 397.456 kb on + strand, within GFF716 at 397.457 kb on - strand, within GFF716 at 397.477 kb on + strand, within GFF716 at 397.478 kb on - strand, within GFF716 at 397.505 kb on - strand, within GFF716 at 397.541 kb on - strand at 397.547 kb on - strand at 397.547 kb on - strand at 397.670 kb on - strand at 397.677 kb on + strand at 397.678 kb on - strand at 397.762 kb on - strand at 397.762 kb on - strand at 397.762 kb on - strand at 397.794 kb on + strand at 397.794 kb on + strand at 397.794 kb on + strand at 397.794 kb on + strand at 397.795 kb on - strand at 397.821 kb on + strand at 397.821 kb on + strand at 397.822 kb on - strand at 397.822 kb on - strand at 397.822 kb on - strand at 397.822 kb on - strand at 397.902 kb on + strand at 397.902 kb on + strand at 397.903 kb on - strand at 397.903 kb on - strand at 397.903 kb on - strand at 397.986 kb on - strand, within GFF717 at 397.990 kb on + strand, within GFF717 at 397.991 kb on + strand, within GFF717 at 397.991 kb on + strand, within GFF717 at 398.186 kb on + strand, within GFF717 at 398.186 kb on + strand, within GFF717 at 398.186 kb on + strand, within GFF717 at 398.187 kb on - strand, within GFF717 at 398.187 kb on - strand, within GFF717 at 398.199 kb on - strand, within GFF717 at 398.199 kb on - strand, within GFF717 at 398.199 kb on - strand, within GFF717 at 398.199 kb on - strand, within GFF717
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 396,070 - GFF715 0.66 +1.0 396,070 - GFF715 0.66 +0.9 396,201 + GFF715 0.74 +1.7 396,202 - GFF715 0.74 +1.0 396,277 - GFF715 0.78 +0.1 396,387 + GFF715 0.84 +0.7 396,387 + GFF715 0.84 -0.2 396,388 - GFF715 0.85 +0.2 396,388 - GFF715 0.85 -0.1 396,588 + +0.3 396,588 + +0.0 396,612 + -1.0 396,612 + -0.2 396,613 - -0.1 397,204 + GFF716 0.35 -1.7 397,204 + GFF716 0.35 -1.6 397,204 + GFF716 0.35 -1.0 397,205 - GFF716 0.35 -0.6 397,205 - GFF716 0.35 -1.4 397,205 - GFF716 0.35 -0.5 397,205 - GFF716 0.35 -0.9 397,205 - GFF716 0.35 +0.0 397,205 - GFF716 0.35 -0.3 397,426 + GFF716 0.71 -1.3 397,435 + GFF716 0.73 -0.4 397,436 - GFF716 0.73 -0.5 397,436 - GFF716 0.73 -1.1 397,456 + GFF716 0.76 -0.8 397,457 - GFF716 0.76 -1.7 397,477 + GFF716 0.80 -1.0 397,478 - GFF716 0.80 -2.2 397,505 - GFF716 0.84 -0.9 397,541 - -2.2 397,547 - +0.3 397,547 - -0.9 397,670 - +0.1 397,677 + -0.2 397,678 - +0.5 397,762 - -0.2 397,762 - -0.1 397,762 - +0.1 397,794 + -0.3 397,794 + +0.9 397,794 + +0.6 397,794 + +1.4 397,795 - -0.0 397,821 + +0.7 397,821 + -0.9 397,822 - +0.6 397,822 - +0.4 397,822 - +1.0 397,822 - -0.0 397,902 + +0.1 397,902 + -0.5 397,903 - -0.1 397,903 - +0.1 397,903 - +0.4 397,986 - GFF717 0.19 -0.4 397,990 + GFF717 0.20 +0.8 397,991 + GFF717 0.20 -0.6 397,991 + GFF717 0.20 -1.2 398,186 + GFF717 0.66 +0.0 398,186 + GFF717 0.66 +0.3 398,186 + GFF717 0.66 +1.0 398,187 - GFF717 0.66 -1.0 398,187 - GFF717 0.66 +3.6 398,199 - GFF717 0.69 +0.5 398,199 - GFF717 0.69 +0.3 398,199 - GFF717 0.69 -0.2 398,199 - GFF717 0.69 +0.0
Or see this region's nucleotide sequence