Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF653 and GFF654 are separated by 11 nucleotides GFF654 and GFF655 overlap by 4 nucleotides GFF655 and GFF656 are separated by 241 nucleotides
GFF653 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 334,063 to 334,800
GFF653
GFF654 - Glyoxalase family protein, at 334,812 to 335,165
GFF654
GFF655 - Sigma-54 activated regulatory protein, at 335,162 to 336,391
GFF655
GFF656 - Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8), at 336,633 to 338,771
GFF656
Position (kb) 335
336
337 Strain fitness (log2 ratio) -2
-1
0
1
2 at 334.399 kb on + strand, within GFF653 at 334.711 kb on + strand, within GFF653 at 334.798 kb on + strand at 334.846 kb on - strand at 334.846 kb on - strand at 334.846 kb on - strand at 334.846 kb on - strand at 334.846 kb on - strand at 334.890 kb on + strand, within GFF654 at 334.890 kb on + strand, within GFF654 at 334.891 kb on - strand, within GFF654 at 334.891 kb on - strand, within GFF654 at 335.019 kb on + strand, within GFF654 at 335.020 kb on - strand, within GFF654 at 335.202 kb on + strand at 335.203 kb on - strand at 335.754 kb on + strand, within GFF655 at 335.754 kb on + strand, within GFF655 at 335.754 kb on + strand, within GFF655 at 335.754 kb on + strand, within GFF655 at 335.754 kb on + strand, within GFF655 at 335.755 kb on - strand, within GFF655 at 336.832 kb on - strand at 336.832 kb on - strand at 336.918 kb on + strand, within GFF656 at 336.918 kb on + strand, within GFF656 at 336.919 kb on - strand, within GFF656 at 336.978 kb on + strand, within GFF656 at 336.978 kb on + strand, within GFF656 at 336.978 kb on + strand, within GFF656 at 336.978 kb on + strand, within GFF656 at 336.978 kb on + strand, within GFF656 at 336.978 kb on + strand, within GFF656 at 336.978 kb on + strand, within GFF656 at 336.978 kb on + strand, within GFF656 at 336.979 kb on - strand, within GFF656 at 336.979 kb on - strand, within GFF656 at 336.979 kb on - strand, within GFF656 at 337.227 kb on + strand, within GFF656 at 337.228 kb on - strand, within GFF656 at 337.228 kb on - strand, within GFF656 at 337.308 kb on + strand, within GFF656 at 337.309 kb on - strand, within GFF656 at 337.320 kb on + strand, within GFF656
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 334,399 + GFF653 0.46 -1.2 334,711 + GFF653 0.88 +0.2 334,798 + +0.2 334,846 - -0.1 334,846 - -1.8 334,846 - -0.3 334,846 - -0.1 334,846 - -0.2 334,890 + GFF654 0.22 +0.1 334,890 + GFF654 0.22 +0.4 334,891 - GFF654 0.22 +0.1 334,891 - GFF654 0.22 +0.4 335,019 + GFF654 0.58 -0.3 335,020 - GFF654 0.59 +1.0 335,202 + +0.6 335,203 - +2.0 335,754 + GFF655 0.48 +0.5 335,754 + GFF655 0.48 +0.2 335,754 + GFF655 0.48 +0.7 335,754 + GFF655 0.48 -0.1 335,754 + GFF655 0.48 +0.6 335,755 - GFF655 0.48 +0.0 336,832 - -0.6 336,832 - +1.0 336,918 + GFF656 0.13 +0.0 336,918 + GFF656 0.13 +0.5 336,919 - GFF656 0.13 +0.1 336,978 + GFF656 0.16 -1.3 336,978 + GFF656 0.16 -0.4 336,978 + GFF656 0.16 -0.3 336,978 + GFF656 0.16 +0.2 336,978 + GFF656 0.16 +0.2 336,978 + GFF656 0.16 +1.2 336,978 + GFF656 0.16 +1.0 336,978 + GFF656 0.16 +0.6 336,979 - GFF656 0.16 -0.1 336,979 - GFF656 0.16 +1.0 336,979 - GFF656 0.16 -0.6 337,227 + GFF656 0.28 +0.6 337,228 - GFF656 0.28 +2.0 337,228 - GFF656 0.28 +0.5 337,308 + GFF656 0.32 +0.6 337,309 - GFF656 0.32 +0.0 337,320 + GFF656 0.32 +0.0
Or see this region's nucleotide sequence