Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF629 and GFF630 are separated by 177 nucleotides GFF630 and GFF631 are separated by 187 nucleotides GFF631 and GFF632 overlap by 28 nucleotides
GFF629 - Transcriptional regulator, LysR family, at 305,590 to 306,465
GFF629
GFF630 - GTP-binding and nucleic acid-binding protein YchF, at 306,643 to 307,734
GFF630
GFF631 - tRNA pseudouridine synthase A (EC 4.2.1.70), at 307,922 to 308,725
GFF631
GFF632 - putative transporter, at 308,698 to 309,876
GFF632
Position (kb) 306
307
308 Strain fitness (log2 ratio) -2
-1
0
1 at 305.953 kb on + strand, within GFF629 at 306.052 kb on + strand, within GFF629 at 306.053 kb on - strand, within GFF629 at 306.053 kb on - strand, within GFF629 at 306.145 kb on + strand, within GFF629 at 306.145 kb on + strand, within GFF629 at 306.157 kb on + strand, within GFF629 at 306.158 kb on - strand, within GFF629 at 306.158 kb on - strand, within GFF629 at 306.370 kb on + strand, within GFF629 at 306.373 kb on + strand, within GFF629 at 306.373 kb on + strand, within GFF629 at 306.373 kb on + strand, within GFF629 at 306.373 kb on + strand, within GFF629 at 306.373 kb on + strand, within GFF629 at 306.374 kb on - strand, within GFF629 at 306.374 kb on - strand, within GFF629 at 306.374 kb on - strand, within GFF629 at 306.374 kb on - strand, within GFF629 at 306.374 kb on - strand, within GFF629 at 306.374 kb on - strand, within GFF629 at 306.376 kb on - strand, within GFF629 at 306.376 kb on - strand, within GFF629 at 306.467 kb on + strand at 306.467 kb on + strand at 306.467 kb on + strand at 306.468 kb on - strand at 306.630 kb on + strand at 306.630 kb on - strand at 306.630 kb on - strand at 306.737 kb on - strand at 307.463 kb on - strand, within GFF630 at 307.486 kb on + strand, within GFF630 at 307.486 kb on + strand, within GFF630 at 307.486 kb on + strand, within GFF630 at 307.486 kb on + strand, within GFF630 at 307.487 kb on - strand, within GFF630 at 307.487 kb on - strand, within GFF630 at 307.487 kb on - strand, within GFF630 at 307.588 kb on + strand, within GFF630 at 307.588 kb on + strand, within GFF630 at 307.588 kb on + strand, within GFF630 at 307.588 kb on + strand, within GFF630 at 307.588 kb on + strand, within GFF630 at 307.589 kb on - strand, within GFF630 at 307.589 kb on - strand, within GFF630 at 307.589 kb on - strand, within GFF630 at 307.589 kb on - strand, within GFF630 at 307.589 kb on - strand, within GFF630 at 307.687 kb on + strand at 307.687 kb on + strand at 307.688 kb on - strand at 307.688 kb on - strand at 307.688 kb on - strand at 307.688 kb on - strand at 307.688 kb on - strand at 307.732 kb on + strand at 307.732 kb on + strand at 307.732 kb on + strand at 307.732 kb on + strand at 307.732 kb on + strand at 307.732 kb on + strand at 307.733 kb on - strand at 307.733 kb on - strand at 307.831 kb on + strand at 307.940 kb on - strand at 308.039 kb on + strand, within GFF631 at 308.039 kb on + strand, within GFF631 at 308.039 kb on + strand, within GFF631 at 308.039 kb on + strand, within GFF631 at 308.040 kb on - strand, within GFF631 at 308.040 kb on - strand, within GFF631 at 308.040 kb on - strand, within GFF631 at 308.155 kb on - strand, within GFF631 at 308.700 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 305,953 + GFF629 0.41 -0.1 306,052 + GFF629 0.53 +0.0 306,053 - GFF629 0.53 -0.7 306,053 - GFF629 0.53 +0.4 306,145 + GFF629 0.63 +0.3 306,145 + GFF629 0.63 -1.4 306,157 + GFF629 0.65 -0.1 306,158 - GFF629 0.65 +0.3 306,158 - GFF629 0.65 +0.3 306,370 + GFF629 0.89 +0.0 306,373 + GFF629 0.89 +0.0 306,373 + GFF629 0.89 -0.6 306,373 + GFF629 0.89 -0.6 306,373 + GFF629 0.89 +0.3 306,373 + GFF629 0.89 +1.0 306,374 - GFF629 0.89 +0.7 306,374 - GFF629 0.89 +0.2 306,374 - GFF629 0.89 -0.7 306,374 - GFF629 0.89 +0.9 306,374 - GFF629 0.89 -0.5 306,374 - GFF629 0.89 +0.5 306,376 - GFF629 0.90 +0.3 306,376 - GFF629 0.90 +0.0 306,467 + +0.4 306,467 + +0.4 306,467 + +0.1 306,468 - -0.7 306,630 + +0.0 306,630 - +0.7 306,630 - -1.1 306,737 - -0.4 307,463 - GFF630 0.75 +0.0 307,486 + GFF630 0.77 -0.7 307,486 + GFF630 0.77 +0.0 307,486 + GFF630 0.77 -0.2 307,486 + GFF630 0.77 -1.3 307,487 - GFF630 0.77 -0.6 307,487 - GFF630 0.77 -0.6 307,487 - GFF630 0.77 -1.5 307,588 + GFF630 0.87 -0.2 307,588 + GFF630 0.87 -0.7 307,588 + GFF630 0.87 +0.2 307,588 + GFF630 0.87 +1.0 307,588 + GFF630 0.87 -1.1 307,589 - GFF630 0.87 -0.6 307,589 - GFF630 0.87 -1.7 307,589 - GFF630 0.87 -1.2 307,589 - GFF630 0.87 -0.9 307,589 - GFF630 0.87 -1.1 307,687 + -0.9 307,687 + +0.1 307,688 - -1.1 307,688 - +1.0 307,688 - -1.8 307,688 - +0.4 307,688 - -0.1 307,732 + +0.6 307,732 + +0.8 307,732 + +0.1 307,732 + -0.3 307,732 + +0.2 307,732 + +0.1 307,733 - +0.0 307,733 - +0.1 307,831 + +0.0 307,940 - -0.7 308,039 + GFF631 0.15 +0.1 308,039 + GFF631 0.15 -0.0 308,039 + GFF631 0.15 -0.4 308,039 + GFF631 0.15 -0.0 308,040 - GFF631 0.15 +0.1 308,040 - GFF631 0.15 +0.3 308,040 - GFF631 0.15 +0.0 308,155 - GFF631 0.29 -1.3 308,700 - +0.0
Or see this region's nucleotide sequence