Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF617 and GFF618 are separated by 16 nucleotides GFF618 and GFF1074 are separated by 65 nucleotides GFF1074 and GFF619 are separated by 37 nucleotides GFF619 and GFF620 are separated by 145 nucleotides GFF620 and GFF621 are separated by 2 nucleotides
GFF617 - Putative methyltransferase associated with DUF414, at 294,094 to 294,726
GFF617
GFF618 - YaeQ protein, at 294,743 to 295,303
GFF618
GFF1074 - tRNA-Met-CAT, at 295,369 to 295,442
GFF1074
GFF619 - Enoyl-CoA hydratase (EC 4.2.1.17), at 295,480 to 296,268
GFF619
GFF620 - Enoyl-CoA hydratase (EC 4.2.1.17), at 296,414 to 297,208
GFF620
GFF621 - Phenylacetic acid degradation protein PaaD, thioesterase, at 297,211 to 297,651
GFF621
Position (kb) 295
296
297 Strain fitness (log2 ratio) -2
-1
0
1
2 at 294.584 kb on + strand, within GFF617 at 294.662 kb on + strand, within GFF617 at 294.663 kb on - strand at 294.744 kb on + strand at 294.744 kb on + strand at 294.744 kb on + strand at 294.744 kb on + strand at 294.745 kb on - strand at 294.745 kb on - strand at 294.745 kb on - strand at 294.963 kb on + strand, within GFF618 at 294.963 kb on + strand, within GFF618 at 294.963 kb on + strand, within GFF618 at 294.963 kb on + strand, within GFF618 at 295.239 kb on + strand, within GFF618 at 295.239 kb on + strand, within GFF618 at 295.239 kb on + strand, within GFF618 at 295.240 kb on - strand, within GFF618 at 295.460 kb on - strand at 295.460 kb on - strand at 296.009 kb on + strand, within GFF619 at 296.009 kb on + strand, within GFF619 at 296.010 kb on - strand, within GFF619 at 296.021 kb on + strand, within GFF619 at 296.022 kb on - strand, within GFF619 at 296.039 kb on + strand, within GFF619 at 296.039 kb on + strand, within GFF619 at 296.039 kb on + strand, within GFF619 at 296.039 kb on + strand, within GFF619 at 296.039 kb on + strand, within GFF619 at 296.039 kb on + strand, within GFF619 at 296.039 kb on + strand, within GFF619 at 296.040 kb on - strand, within GFF619 at 296.040 kb on - strand, within GFF619 at 296.040 kb on - strand, within GFF619 at 296.040 kb on - strand, within GFF619 at 296.040 kb on - strand, within GFF619 at 296.040 kb on - strand, within GFF619 at 296.040 kb on - strand, within GFF619 at 296.040 kb on - strand, within GFF619 at 296.311 kb on + strand at 296.311 kb on + strand at 296.311 kb on + strand at 296.311 kb on + strand at 296.311 kb on + strand at 296.311 kb on + strand at 296.312 kb on - strand at 296.312 kb on - strand at 296.312 kb on - strand at 296.312 kb on - strand at 296.312 kb on - strand at 296.313 kb on + strand at 296.313 kb on + strand at 296.313 kb on + strand at 296.314 kb on - strand at 296.314 kb on - strand at 296.368 kb on - strand at 296.435 kb on + strand at 296.435 kb on + strand at 296.436 kb on - strand at 297.149 kb on + strand at 297.150 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 294,584 + GFF617 0.77 +0.3 294,662 + GFF617 0.90 +0.2 294,663 - +0.5 294,744 + +0.2 294,744 + -0.1 294,744 + +0.5 294,744 + -0.6 294,745 - -0.2 294,745 - +0.4 294,745 - +0.1 294,963 + GFF618 0.39 +0.0 294,963 + GFF618 0.39 +0.4 294,963 + GFF618 0.39 -1.8 294,963 + GFF618 0.39 -0.1 295,239 + GFF618 0.88 -0.0 295,239 + GFF618 0.88 +2.0 295,239 + GFF618 0.88 +0.2 295,240 - GFF618 0.89 +1.7 295,460 - +0.2 295,460 - +0.0 296,009 + GFF619 0.67 +0.4 296,009 + GFF619 0.67 -0.2 296,010 - GFF619 0.67 -0.5 296,021 + GFF619 0.69 -1.1 296,022 - GFF619 0.69 -0.6 296,039 + GFF619 0.71 -0.2 296,039 + GFF619 0.71 +0.0 296,039 + GFF619 0.71 +0.0 296,039 + GFF619 0.71 -1.2 296,039 + GFF619 0.71 -1.4 296,039 + GFF619 0.71 +0.0 296,039 + GFF619 0.71 -0.1 296,040 - GFF619 0.71 +0.3 296,040 - GFF619 0.71 -1.0 296,040 - GFF619 0.71 -1.0 296,040 - GFF619 0.71 -1.8 296,040 - GFF619 0.71 -0.3 296,040 - GFF619 0.71 -0.7 296,040 - GFF619 0.71 -0.3 296,040 - GFF619 0.71 -0.9 296,311 + +1.0 296,311 + -0.6 296,311 + -0.2 296,311 + -0.3 296,311 + +0.9 296,311 + -0.6 296,312 - -0.3 296,312 - +0.4 296,312 - -0.4 296,312 - +0.8 296,312 - -0.3 296,313 + -0.3 296,313 + -0.1 296,313 + -1.2 296,314 - +1.1 296,314 - -0.2 296,368 - +0.0 296,435 + +0.2 296,435 + -0.0 296,436 - +0.6 297,149 + -0.1 297,150 - +0.8
Or see this region's nucleotide sequence