Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5759

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
2,783,380	+		GFF5758	0.11	+0.4
2,783,774	-		GFF5758	0.55	-0.2
2,783,869	+		GFF5758	0.65	+1.3
2,784,376	+				-1.1
2,784,376	+				-0.9
2,784,377	-				-1.3
2,784,377	-				-1.9
2,784,377	-				-1.1
2,784,378	-				-3.7
2,784,517	+		GFF5759	0.20	-1.9
2,784,517	+		GFF5759	0.20	-1.8
2,784,518	-		GFF5759	0.20	-0.2
2,784,518	-		GFF5759	0.20	-1.6
2,784,518	-		GFF5759	0.20	+0.9
2,784,518	-		GFF5759	0.20	-2.2
2,784,518	-		GFF5759	0.20	-1.9
2,784,518	-		GFF5759	0.20	-1.7
2,784,649	+		GFF5759	0.31	-0.8
2,784,764	-		GFF5759	0.41	-1.4
2,785,078	+		GFF5759	0.68	-2.1
2,785,079	-		GFF5759	0.68	-1.3
2,785,390	+				-1.9
2,785,390	+				-1.1
2,785,391	-				-1.1
2,785,510	-				-0.1
2,785,514	+				-0.2
2,785,514	+				+0.0
2,785,514	+				-0.1
2,785,514	+				-0.5
2,785,532	+				-0.3
2,785,737	+		GFF5760	0.28	-0.2
2,785,962	+		GFF5760	0.61	-0.4
2,785,963	-		GFF5760	0.61	+1.9
2,786,067	+		GFF5760	0.77	-0.9
2,786,067	+		GFF5760	0.77	-0.3
2,786,067	+		GFF5760	0.77	-1.2
2,786,067	+		GFF5760	0.77	-1.5
2,786,067	+		GFF5760	0.77	-0.2
2,786,067	+		GFF5760	0.77	-0.7
2,786,067	+		GFF5760	0.77	-0.2
2,786,067	+		GFF5760	0.77	-0.0
2,786,067	+		GFF5760	0.77	-0.8
2,786,067	+		GFF5760	0.77	+0.0
2,786,067	+		GFF5760	0.77	-0.1
2,786,068	-		GFF5760	0.77	-0.9
2,786,068	-		GFF5760	0.77	+0.3
2,786,068	-		GFF5760	0.77	-1.1
2,786,068	-		GFF5760	0.77	+0.3
2,786,068	-		GFF5760	0.77	+0.0
2,786,068	-		GFF5760	0.77	-0.8
2,786,068	-		GFF5760	0.77	-0.8
2,786,381	+		GFF5761	0.14	+0.2
2,786,382	-		GFF5761	0.14	-1.4
2,786,382	-		GFF5761	0.14	+0.5
2,786,382	-		GFF5761	0.14	-0.1