Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5631

Experiment: Ying_all64 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5630 and GFF5631 are separated by 40 nucleotidesGFF5631 and GFF5632 are separated by 16 nucleotides GFF5630 - Transcriptional regulator, AraC family, at 2,648,991 to 2,649,938 GFF5630 GFF5631 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 2,649,979 to 2,651,115 GFF5631 GFF5632 - Regulatory protein, LuxR:Tetratricopeptide TPR_4, at 2,651,132 to 2,653,891 GFF5632 Position (kb) 2649 2650 2651 2652Strain fitness (log2 ratio) -1 0 1at 2649.578 kb on - strand, within GFF5630at 2650.029 kb on - strandat 2650.323 kb on - strand, within GFF5631at 2650.907 kb on + strand, within GFF5631at 2650.907 kb on + strand, within GFF5631at 2650.908 kb on - strand, within GFF5631at 2651.521 kb on - strand, within GFF5632

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3
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2,649,578 - GFF5630 0.62 -0.4
2,650,029 - +0.3
2,650,323 - GFF5631 0.30 +0.5
2,650,907 + GFF5631 0.82 -0.7
2,650,907 + GFF5631 0.82 +0.1
2,650,908 - GFF5631 0.82 +0.4
2,651,521 - GFF5632 0.14 -0.5

Or see this region's nucleotide sequence