Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF535 and GFF536 are separated by 35 nucleotides GFF536 and GFF537 are separated by 19 nucleotides
GFF535 - Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82), at 203,430 to 204,482
GFF535
GFF536 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 204,518 to 205,654
GFF536
GFF537 - Metallo-beta-lactamase family protein, at 205,674 to 207,347
GFF537
Position (kb) 204
205
206 Strain fitness (log2 ratio) -1
0
1 at 203.530 kb on - strand at 203.530 kb on - strand at 203.721 kb on + strand, within GFF535 at 203.805 kb on + strand, within GFF535 at 203.805 kb on + strand, within GFF535 at 203.844 kb on + strand, within GFF535 at 203.910 kb on + strand, within GFF535 at 203.910 kb on + strand, within GFF535 at 204.031 kb on - strand, within GFF535 at 204.082 kb on - strand, within GFF535 at 204.087 kb on + strand, within GFF535 at 204.279 kb on + strand, within GFF535 at 204.493 kb on - strand at 204.497 kb on - strand at 204.699 kb on - strand, within GFF536 at 205.004 kb on + strand, within GFF536 at 205.223 kb on + strand, within GFF536 at 205.224 kb on - strand, within GFF536 at 205.376 kb on + strand, within GFF536 at 205.403 kb on + strand, within GFF536 at 205.403 kb on + strand, within GFF536 at 205.403 kb on + strand, within GFF536 at 205.569 kb on - strand at 205.586 kb on + strand at 205.768 kb on + strand at 205.942 kb on + strand, within GFF537 at 205.943 kb on - strand, within GFF537 at 206.017 kb on + strand, within GFF537 at 206.482 kb on + strand, within GFF537 at 206.650 kb on + strand, within GFF537
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 203,530 - +1.0 203,530 - -0.3 203,721 + GFF535 0.28 +0.3 203,805 + GFF535 0.36 +1.6 203,805 + GFF535 0.36 -1.0 203,844 + GFF535 0.39 -0.1 203,910 + GFF535 0.46 +1.5 203,910 + GFF535 0.46 -0.4 204,031 - GFF535 0.57 +0.4 204,082 - GFF535 0.62 +0.5 204,087 + GFF535 0.62 +0.0 204,279 + GFF535 0.81 +0.5 204,493 - -0.5 204,497 - -0.6 204,699 - GFF536 0.16 -0.4 205,004 + GFF536 0.43 +1.4 205,223 + GFF536 0.62 +0.3 205,224 - GFF536 0.62 -0.5 205,376 + GFF536 0.75 -0.6 205,403 + GFF536 0.78 -0.7 205,403 + GFF536 0.78 +0.2 205,403 + GFF536 0.78 -0.2 205,569 - -1.6 205,586 + -0.0 205,768 + -0.4 205,942 + GFF537 0.16 -1.0 205,943 - GFF537 0.16 +0.0 206,017 + GFF537 0.20 +0.3 206,482 + GFF537 0.48 +0.5 206,650 + GFF537 0.58 -0.2
Or see this region's nucleotide sequence