Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5242

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
2,256,807	-				+0.0
2,256,877	+		GFF5241	0.15	-0.9
2,256,878	-		GFF5241	0.15	-0.0
2,256,910	+		GFF5241	0.20	+0.2
2,256,910	+		GFF5241	0.20	+0.5
2,256,979	+		GFF5241	0.30	+0.7
2,256,979	+		GFF5241	0.30	+1.4
2,256,991	+		GFF5241	0.32	+1.0
2,256,992	-		GFF5241	0.32	+2.3
2,256,992	-		GFF5241	0.32	+0.1
2,257,214	-		GFF5241	0.66	+1.3
2,257,214	-		GFF5241	0.66	+0.4
2,257,399	+				+0.9
2,257,400	-				-0.3
2,257,400	-				-0.2
2,257,423	-				+0.1
2,257,580	+				+1.5
2,257,589	+				+0.1
2,257,955	+		GFF5242	0.31	+0.7
2,257,956	-		GFF5242	0.32	-1.6
2,258,021	+		GFF5242	0.37	-1.1
2,258,030	+		GFF5242	0.38	+1.0
2,258,030	+		GFF5242	0.38	-0.7
2,258,031	-		GFF5242	0.38	+0.1
2,258,378	+		GFF5242	0.66	-0.5
2,258,378	+		GFF5242	0.66	-0.1
2,258,378	+		GFF5242	0.66	-0.4
2,258,379	-		GFF5242	0.66	-1.0
2,258,432	+		GFF5242	0.71	-1.6
2,258,433	-		GFF5242	0.71	-0.6
2,258,442	-		GFF5242	0.72	-0.0
2,258,442	-		GFF5242	0.72	+1.0
2,258,442	-		GFF5242	0.72	+0.1
2,258,442	-		GFF5242	0.72	-0.2
2,258,472	+		GFF5242	0.74	+0.2
2,258,507	+		GFF5242	0.77	-0.7
2,258,658	+		GFF5242	0.89	+0.2
2,258,666	+				-0.1
2,258,667	-				-0.6
2,258,744	+				+0.6
2,258,844	-				+1.0
2,258,844	-				+0.3
2,259,431	+		GFF5243	0.54	-0.1
2,259,503	+		GFF5243	0.60	-1.0