Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5143

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
2,152,790	+		GFF5142	0.56	-0.0
2,152,790	+		GFF5142	0.56	+0.1
2,152,791	-		GFF5142	0.57	-0.1
2,152,791	-		GFF5142	0.57	-0.1
2,152,791	-		GFF5142	0.57	-0.5
2,152,809	+		GFF5142	0.65	-1.7
2,152,810	-		GFF5142	0.66	-1.0
2,152,811	+		GFF5142	0.66	+0.6
2,152,812	-		GFF5142	0.67	-1.4
2,152,812	-		GFF5142	0.67	+0.7
2,152,812	-		GFF5142	0.67	-1.0
2,153,135	-		GFF5143	0.15	-1.0
2,153,291	-		GFF5143	0.30	-1.0
2,153,392	+		GFF5143	0.40	-2.9
2,153,417	-		GFF5143	0.42	-1.4
2,153,738	-		GFF5143	0.74	-0.9
2,153,738	-		GFF5143	0.74	-0.0
2,153,750	-		GFF5143	0.75	-1.1
2,153,750	-		GFF5143	0.75	-1.2
2,153,908	+				-0.6
2,153,908	+				-0.9
2,153,908	+				+0.6
2,153,909	-				-1.0
2,153,909	-				-0.2
2,154,381	+		GFF5144	0.19	-0.5
2,154,381	+		GFF5144	0.19	+0.6
2,154,382	-		GFF5144	0.20	+0.7
2,154,382	-		GFF5144	0.20	+0.1
2,154,382	-		GFF5144	0.20	+0.8
2,154,709	-		GFF5144	0.43	-1.0
2,154,709	-		GFF5144	0.43	-0.6
2,154,709	-		GFF5144	0.43	-1.4
2,154,786	+		GFF5144	0.49	-0.0
2,154,787	-		GFF5144	0.49	+0.3
2,154,787	-		GFF5144	0.49	+0.0
2,154,789	+		GFF5144	0.49	-0.6
2,154,789	+		GFF5144	0.49	-1.2
2,154,789	+		GFF5144	0.49	-0.4
2,154,789	+		GFF5144	0.49	+0.1
2,154,790	-		GFF5144	0.49	-0.2
2,154,790	-		GFF5144	0.49	-0.3
2,154,790	-		GFF5144	0.49	+0.2
2,154,790	-		GFF5144	0.49	-0.8
2,154,790	-		GFF5144	0.49	-0.5
2,154,790	-		GFF5144	0.49	-1.0
2,154,858	+		GFF5144	0.54	-0.9
2,154,858	+		GFF5144	0.54	-0.8
2,154,861	+		GFF5144	0.54	-0.4
2,154,861	+		GFF5144	0.54	-1.0
2,154,861	+		GFF5144	0.54	-0.1
2,154,862	-		GFF5144	0.54	+0.2
2,154,862	-		GFF5144	0.54	-1.0
2,154,862	-		GFF5144	0.54	-0.9
2,154,903	+		GFF5144	0.57	-1.0
2,154,903	+		GFF5144	0.57	-0.7
2,154,903	+		GFF5144	0.57	-0.4
2,154,904	-		GFF5144	0.57	-0.4
2,154,931	-		GFF5144	0.59	-0.3
2,154,931	-		GFF5144	0.59	+0.1
2,154,931	-		GFF5144	0.59	+0.5
2,154,931	-		GFF5144	0.59	-0.0