Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5005

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
2,019,191	+		GFF5004	0.24	-1.4
2,019,211	+		GFF5004	0.26	-0.0
2,019,297	+		GFF5004	0.34	+0.7
2,019,329	+		GFF5004	0.37	-0.3
2,019,330	-		GFF5004	0.38	+0.3
2,019,330	-		GFF5004	0.38	-0.1
2,019,539	+		GFF5004	0.57	+0.5
2,019,539	+		GFF5004	0.57	+0.3
2,019,540	-		GFF5004	0.57	+0.3
2,019,540	-		GFF5004	0.57	-0.1
2,019,608	+		GFF5004	0.64	+0.5
2,019,609	-		GFF5004	0.64	+0.3
2,019,635	+		GFF5004	0.66	-0.0
2,019,636	-		GFF5004	0.66	+0.0
2,019,636	-		GFF5004	0.66	-1.1
2,019,975	-				+0.3
2,020,040	+				+0.4
2,020,162	+				-1.0
2,020,436	+		GFF5005	0.38	-1.1
2,020,610	+		GFF5005	0.62	+0.0
2,020,611	-		GFF5005	0.62	+0.0
2,020,885	+				+1.3
2,021,077	+		GFF5006	0.31	-0.3
2,021,131	+		GFF5006	0.39	+0.6
2,021,132	-		GFF5006	0.39	+0.8
2,021,368	+		GFF5006	0.76	-0.1
2,021,404	+		GFF5006	0.81	+0.4
2,021,405	-		GFF5006	0.82	+0.4
2,021,405	-		GFF5006	0.82	-0.3
2,021,405	-		GFF5006	0.82	-1.8
2,021,870	+		GFF5007	0.37	+1.2