Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4785

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
1,793,777	+		GFF4784	0.24	+0.7
1,793,783	+		GFF4784	0.25	-0.3
1,793,784	-		GFF4784	0.25	-1.1
1,794,511	+		GFF4785	0.10	-1.8
1,794,511	+		GFF4785	0.10	+0.1
1,794,512	-		GFF4785	0.10	-0.1
1,794,512	-		GFF4785	0.10	-2.7
1,794,664	+		GFF4785	0.17	-1.1
1,794,664	+		GFF4785	0.17	-1.8
1,794,664	+		GFF4785	0.17	-1.4
1,794,730	+		GFF4785	0.21	-1.0
1,794,731	-		GFF4785	0.21	-1.0
1,794,802	+		GFF4785	0.24	-1.9
1,794,802	+		GFF4785	0.24	-1.6
1,794,802	+		GFF4785	0.24	-2.2
1,794,803	-		GFF4785	0.24	-2.3
1,794,803	-		GFF4785	0.24	-0.7
1,794,803	-		GFF4785	0.24	-2.5
1,794,841	+		GFF4785	0.26	-1.0
1,794,842	-		GFF4785	0.26	-2.1
1,794,992	-		GFF4785	0.33	+0.3
1,795,180	+		GFF4785	0.43	-0.9
1,795,180	+		GFF4785	0.43	-2.0
1,795,181	-		GFF4785	0.43	-1.1
1,795,181	-		GFF4785	0.43	-1.2
1,795,181	-		GFF4785	0.43	-2.2
1,795,181	-		GFF4785	0.43	-1.9
1,795,181	-		GFF4785	0.43	-3.3
1,795,181	-		GFF4785	0.43	-1.4
1,795,501	+		GFF4785	0.58	-1.4
1,795,502	-		GFF4785	0.58	-1.8
1,795,502	-		GFF4785	0.58	-1.3
1,795,502	-		GFF4785	0.58	-0.1
1,795,552	+		GFF4785	0.61	-2.0
1,795,552	+		GFF4785	0.61	-0.9
1,795,687	+		GFF4785	0.67	-1.8
1,795,688	-		GFF4785	0.67	-2.0
1,796,176	+				-1.2
1,796,176	+				-1.6
1,796,177	-				-2.0
1,796,177	-				-0.9
1,796,177	-				-0.6
1,796,177	-				-3.0
1,796,260	+				-2.1
1,796,348	+				-0.6
1,796,348	+				-1.5
1,796,348	+				-0.7
1,796,537	+		GFF4786	0.11	-2.3
1,796,537	+		GFF4786	0.11	-1.4
1,796,538	-		GFF4786	0.11	-2.4
1,796,538	-		GFF4786	0.11	-1.9
1,796,538	-		GFF4786	0.11	-0.4
1,796,703	-		GFF4786	0.21	-0.6
1,796,751	-		GFF4786	0.25	-2.1
1,796,757	-		GFF4786	0.25	-1.3
1,796,792	+		GFF4786	0.27	-1.2
1,796,793	-		GFF4786	0.27	-0.8
1,797,000	-		GFF4786	0.41	-1.5
1,797,065	+		GFF4786	0.45	-2.0
1,797,065	+		GFF4786	0.45	-1.8
1,797,066	-		GFF4786	0.45	-1.3
1,797,176	+		GFF4786	0.52	-1.1
1,797,176	+		GFF4786	0.52	-1.6
1,797,176	+		GFF4786	0.52	-2.5
1,797,176	+		GFF4786	0.52	-1.6
1,797,176	+		GFF4786	0.52	-1.4
1,797,176	+		GFF4786	0.52	-1.1
1,797,176	+		GFF4786	0.52	-2.5
1,797,176	+		GFF4786	0.52	-1.5
1,797,177	-		GFF4786	0.52	-1.5
1,797,177	-		GFF4786	0.52	-0.4
1,797,177	-		GFF4786	0.52	-0.8
1,797,182	+		GFF4786	0.53	+0.3
1,797,183	-		GFF4786	0.53	-1.4
1,797,341	+		GFF4786	0.63	-1.9
1,797,341	+		GFF4786	0.63	-1.6
1,797,341	+		GFF4786	0.63	-1.7
1,797,341	+		GFF4786	0.63	-1.2
1,797,342	-		GFF4786	0.63	-2.1
1,797,342	-		GFF4786	0.63	-2.2
1,797,342	-		GFF4786	0.63	-2.3
1,797,342	-		GFF4786	0.63	-1.9
1,797,342	-		GFF4786	0.63	-2.0
1,797,342	-		GFF4786	0.63	+0.9
1,797,342	-		GFF4786	0.63	-2.6