Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4501

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
1,427,120	+		GFF4499	0.64	+0.5
1,427,120	+		GFF4499	0.64	+0.7
1,427,121	-		GFF4499	0.64	+0.6
1,427,121	-		GFF4499	0.64	+0.2
1,427,121	-		GFF4499	0.64	-1.4
1,427,121	-		GFF4499	0.64	+0.1
1,427,414	+				+0.5
1,427,415	-				+1.2
1,427,462	+				+0.2
1,427,463	-				-0.2
1,427,481	+				+0.8
1,427,481	+				+1.0
1,427,481	+				+0.8
1,427,481	+				+0.4
1,427,481	+				-0.3
1,427,481	+				-0.1
1,427,482	-				+0.4
1,427,482	-				+0.9
1,427,482	-				-0.0
1,427,482	-				+0.2
1,427,482	-				+0.1
1,427,482	-				-0.1
1,427,482	-				+0.5
1,427,482	-				+0.0
1,427,482	-				+0.9
1,427,493	+				-0.1
1,427,494	-				+0.3
1,427,539	+				+0.3
1,427,540	-				+0.0
1,427,540	-				-0.2
1,427,540	-				+1.7
1,427,540	-				-0.7
1,427,540	-				-1.1
1,427,559	+				+0.4
1,427,559	+				+0.2
1,427,559	+				+1.2
1,427,559	+				+0.6
1,427,559	+				+0.6
1,427,560	-				-0.1
1,427,560	-				-1.4
1,427,560	-				+0.2
1,427,971	+				-0.1
1,428,052	-				-0.6
1,428,151	+		GFF4501	0.12	-0.7
1,428,151	+		GFF4501	0.12	-0.4
1,428,151	+		GFF4501	0.12	-0.7
1,428,152	-		GFF4501	0.13	-2.0
1,428,152	-		GFF4501	0.13	-0.4
1,428,341	-		GFF4501	0.40	-0.9
1,428,379	+		GFF4501	0.46	-0.5
1,428,379	+		GFF4501	0.46	-0.7
1,428,379	+		GFF4501	0.46	-1.7
1,428,379	+		GFF4501	0.46	+0.9
1,428,379	+		GFF4501	0.46	-2.5
1,428,379	+		GFF4501	0.46	-1.6
1,428,380	-		GFF4501	0.46	-1.1
1,428,380	-		GFF4501	0.46	-0.6
1,428,479	+		GFF4501	0.60	-0.3
1,428,479	+		GFF4501	0.60	-1.0
1,428,479	+		GFF4501	0.60	-0.7
1,428,480	-		GFF4501	0.60	+0.7
1,428,480	-		GFF4501	0.60	-0.3
1,428,480	-		GFF4501	0.60	+0.6
1,428,976	+				-0.4
1,428,976	+				-0.3
1,429,393	+		GFF4502	0.53	-0.1
1,429,393	+		GFF4502	0.53	-0.1
1,429,394	-		GFF4502	0.53	-0.7