Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4404

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
1,332,728	+		GFF4403	0.16	+0.6
1,332,728	+		GFF4403	0.16	+1.0
1,332,728	+		GFF4403	0.16	+0.1
1,332,728	+		GFF4403	0.16	-0.3
1,332,729	-		GFF4403	0.16	+0.4
1,332,729	-		GFF4403	0.16	-0.1
1,332,729	-		GFF4403	0.16	-0.2
1,332,729	-		GFF4403	0.16	+0.2
1,332,794	+		GFF4403	0.22	-0.1
1,332,794	+		GFF4403	0.22	+0.1
1,332,794	+		GFF4403	0.22	+0.5
1,332,794	+		GFF4403	0.22	-2.1
1,332,795	-		GFF4403	0.22	-0.5
1,332,795	-		GFF4403	0.22	+0.3
1,332,795	-		GFF4403	0.22	-0.1
1,332,795	-		GFF4403	0.22	-3.1
1,332,795	-		GFF4403	0.22	+0.1
1,332,795	-		GFF4403	0.22	-0.1
1,332,795	-		GFF4403	0.22	+0.2
1,332,795	-		GFF4403	0.22	+0.9
1,332,831	+		GFF4403	0.25	-0.3
1,332,902	+		GFF4403	0.32	+0.4
1,332,902	+		GFF4403	0.32	-0.1
1,332,902	+		GFF4403	0.32	-0.6
1,332,903	-		GFF4403	0.32	+0.2
1,332,903	-		GFF4403	0.32	-0.2
1,332,903	-		GFF4403	0.32	-1.4
1,332,903	-		GFF4403	0.32	-0.5
1,332,903	-		GFF4403	0.32	+0.2
1,332,903	-		GFF4403	0.32	-0.2
1,332,903	-		GFF4403	0.32	-0.9
1,332,903	-		GFF4403	0.32	-0.3
1,332,955	+		GFF4403	0.37	+0.7
1,332,955	+		GFF4403	0.37	+0.1
1,332,955	+		GFF4403	0.37	-1.2
1,332,956	-		GFF4403	0.37	+0.2
1,332,956	-		GFF4403	0.37	+0.1
1,332,956	-		GFF4403	0.37	-0.1
1,332,956	-		GFF4403	0.37	+0.2
1,332,956	-		GFF4403	0.37	-0.7
1,332,956	-		GFF4403	0.37	-0.5
1,332,970	+		GFF4403	0.38	-0.4
1,332,970	+		GFF4403	0.38	-0.4
1,332,970	+		GFF4403	0.38	-0.1
1,332,970	+		GFF4403	0.38	-0.4
1,332,971	-		GFF4403	0.38	-0.2
1,332,971	-		GFF4403	0.38	+0.6
1,333,076	+		GFF4403	0.48	+0.4
1,333,076	+		GFF4403	0.48	-1.9
1,333,076	+		GFF4403	0.48	-0.1
1,333,076	+		GFF4403	0.48	+0.1
1,333,076	+		GFF4403	0.48	+0.2
1,333,077	-		GFF4403	0.48	-0.7
1,333,077	-		GFF4403	0.48	+0.6
1,333,077	-		GFF4403	0.48	+0.0
1,333,077	-		GFF4403	0.48	+0.2
1,333,077	-		GFF4403	0.48	+0.7
1,333,077	-		GFF4403	0.48	+1.6
1,333,077	-		GFF4403	0.48	+0.2
1,333,194	+		GFF4403	0.58	-0.2
1,333,194	+		GFF4403	0.58	+0.3
1,333,194	+		GFF4403	0.58	-0.7
1,333,194	+		GFF4403	0.58	+0.5
1,333,194	+		GFF4403	0.58	+0.0
1,333,194	+		GFF4403	0.58	-0.2
1,333,194	+		GFF4403	0.58	-0.3
1,333,194	+		GFF4403	0.58	-0.4
1,333,194	+		GFF4403	0.58	-0.4
1,333,195	-		GFF4403	0.58	+0.2
1,333,195	-		GFF4403	0.58	+1.1
1,333,195	-		GFF4403	0.58	+0.3
1,333,195	-		GFF4403	0.58	-0.9
1,333,195	-		GFF4403	0.58	-0.5
1,333,195	-		GFF4403	0.58	+0.1
1,333,195	-		GFF4403	0.58	+0.4
1,333,195	-		GFF4403	0.58	+0.2
1,333,195	-		GFF4403	0.58	-0.3
1,333,195	-		GFF4403	0.58	+0.2
1,333,195	-		GFF4403	0.58	+0.4
1,333,195	-		GFF4403	0.58	+0.0
1,333,195	-		GFF4403	0.58	-0.3
1,333,195	-		GFF4403	0.58	-0.1
1,333,265	+		GFF4403	0.65	-0.4
1,333,266	-		GFF4403	0.65	+0.3
1,333,266	-		GFF4403	0.65	+0.2
1,333,266	-		GFF4403	0.65	-0.2
1,333,266	-		GFF4403	0.65	-0.4
1,333,266	-		GFF4403	0.65	-1.3
1,333,287	-		GFF4403	0.67	-0.1
1,333,287	-		GFF4403	0.67	+0.0
1,333,295	-		GFF4403	0.68	-0.2
1,333,320	+		GFF4403	0.70	+0.2
1,333,320	+		GFF4403	0.70	+0.5
1,333,367	-		GFF4403	0.74	-0.2
1,333,446	-		GFF4403	0.81	-0.1
1,333,524	-		GFF4403	0.88	+0.0
1,333,533	+		GFF4403	0.89	+0.6
1,333,533	+		GFF4403	0.89	+1.1
1,333,533	+		GFF4403	0.89	+0.6
1,333,533	+		GFF4403	0.89	-2.0
1,333,533	+		GFF4403	0.89	-0.2
1,333,534	-		GFF4403	0.89	-0.5
1,333,534	-		GFF4403	0.89	-0.4
1,333,534	-		GFF4403	0.89	-0.3
1,333,534	-		GFF4403	0.89	-0.4
1,333,534	-		GFF4403	0.89	+1.9
1,333,578	+				+0.2
1,333,578	+				-0.1
1,333,578	+				-0.0
1,333,578	+				-0.4
1,333,578	+				-0.5
1,333,578	+				-0.5
1,333,578	+				-0.2
1,333,579	-				+0.2
1,333,579	-				-0.4
1,333,579	-				-0.6
1,333,579	-				-0.8
1,333,580	+				-0.7
1,333,580	+				-0.5
1,333,581	-				-0.1
1,333,581	-				-0.7
1,333,581	-				+0.3
1,333,714	+				-0.2
1,333,714	+				-0.1
1,333,715	-				+0.5
1,333,715	-				-0.6
1,333,741	+				+2.5
1,333,742	-				-0.6
1,333,742	-				+0.3
1,333,742	-				-0.8
1,333,742	-				-0.4
1,333,867	+		GFF4404	0.18	-0.4
1,333,868	-		GFF4404	0.18	+1.0
1,333,868	-		GFF4404	0.18	+0.8
1,333,917	+		GFF4404	0.22	+0.6
1,333,966	-		GFF4404	0.26	+0.0
1,333,981	-		GFF4404	0.27	-0.6
1,334,028	+		GFF4404	0.31	+0.5
1,334,028	+		GFF4404	0.31	-0.1
1,334,045	+		GFF4404	0.33	-0.6
1,334,134	+		GFF4404	0.40	-0.4
1,334,135	-		GFF4404	0.40	-0.3
1,334,135	-		GFF4404	0.40	-0.1
1,334,135	-		GFF4404	0.40	-0.2
1,334,135	-		GFF4404	0.40	-0.9
1,334,135	-		GFF4404	0.40	-0.8
1,334,135	-		GFF4404	0.40	-0.7
1,334,347	+		GFF4404	0.58	+0.1
1,334,367	+		GFF4404	0.60	+0.2
1,334,387	+		GFF4404	0.62	+0.9
1,334,388	-		GFF4404	0.62	-0.3
1,334,388	-		GFF4404	0.62	+0.5
1,334,389	+		GFF4404	0.62	-0.2
1,334,389	+		GFF4404	0.62	+0.2
1,334,389	+		GFF4404	0.62	+0.2
1,334,390	-		GFF4404	0.62	-1.0
1,334,390	-		GFF4404	0.62	-0.8
1,334,458	+		GFF4404	0.68	-2.3
1,334,459	-		GFF4404	0.68	-0.1
1,334,459	-		GFF4404	0.68	-0.5
1,334,459	-		GFF4404	0.68	+0.0
1,334,475	+		GFF4404	0.69	+0.4
1,334,475	+		GFF4404	0.69	-0.4
1,334,475	+		GFF4404	0.69	+0.6
1,334,475	+		GFF4404	0.69	-0.8
1,334,475	+		GFF4404	0.69	-0.0
1,334,475	+		GFF4404	0.69	-0.3
1,334,475	+		GFF4404	0.69	-1.4
1,334,475	+		GFF4404	0.69	+0.3
1,334,475	+		GFF4404	0.69	+0.7
1,334,475	+		GFF4404	0.69	-1.1
1,334,476	-		GFF4404	0.69	-0.1
1,334,476	-		GFF4404	0.69	+1.1
1,334,476	-		GFF4404	0.69	+0.9
1,334,476	-		GFF4404	0.69	-0.5
1,334,476	-		GFF4404	0.69	-0.2
1,334,476	-		GFF4404	0.69	-0.1
1,334,476	-		GFF4404	0.69	+0.5
1,334,476	-		GFF4404	0.69	+0.4
1,334,476	-		GFF4404	0.69	+0.1
1,334,566	+		GFF4404	0.77	+0.0
1,334,566	+		GFF4404	0.77	-0.1
1,334,567	-		GFF4404	0.77	+0.4
1,334,567	-		GFF4404	0.77	-0.0
1,334,567	-		GFF4404	0.77	+0.4
1,334,627	+		GFF4404	0.82	-0.1
1,334,627	+		GFF4404	0.82	+0.5
1,334,627	+		GFF4404	0.82	-0.1
1,334,669	-		GFF4404	0.85	-0.0
1,334,669	-		GFF4404	0.85	-0.2
1,334,669	-		GFF4404	0.85	-0.4
1,334,826	-				+0.1
1,334,827	+				-1.2
1,334,846	-				-0.1
1,335,033	+		GFF4405	0.18	-0.4
1,335,033	+		GFF4405	0.18	+0.9
1,335,033	+		GFF4405	0.18	+0.1
1,335,033	+		GFF4405	0.18	-0.1
1,335,033	+		GFF4405	0.18	+0.1
1,335,033	+		GFF4405	0.18	-0.5
1,335,033	+		GFF4405	0.18	-0.2
1,335,033	+		GFF4405	0.18	+0.5
1,335,033	+		GFF4405	0.18	-1.1
1,335,033	+		GFF4405	0.18	-0.3
1,335,033	+		GFF4405	0.18	+0.6
1,335,033	+		GFF4405	0.18	-0.1
1,335,034	-		GFF4405	0.18	+0.2
1,335,034	-		GFF4405	0.18	+0.1
1,335,034	-		GFF4405	0.18	+0.9
1,335,034	-		GFF4405	0.18	+0.1
1,335,034	-		GFF4405	0.18	+0.2
1,335,034	-		GFF4405	0.18	+0.3
1,335,034	-		GFF4405	0.18	+0.2
1,335,034	-		GFF4405	0.18	-0.5
1,335,034	-		GFF4405	0.18	+0.5
1,335,034	-		GFF4405	0.18	+0.0
1,335,034	-		GFF4405	0.18	+1.5
1,335,034	-		GFF4405	0.18	-0.3
1,335,055	+		GFF4405	0.21	-0.1
1,335,055	+		GFF4405	0.21	+0.6
1,335,055	+		GFF4405	0.21	+0.6
1,335,055	+		GFF4405	0.21	-0.6
1,335,055	+		GFF4405	0.21	+0.1
1,335,055	+		GFF4405	0.21	-0.8
1,335,055	+		GFF4405	0.21	-0.4
1,335,055	+		GFF4405	0.21	-0.2
1,335,055	+		GFF4405	0.21	-0.5
1,335,055	+		GFF4405	0.21	-0.2
1,335,055	+		GFF4405	0.21	-0.5
1,335,055	+		GFF4405	0.21	+0.0
1,335,056	-		GFF4405	0.21	-0.1
1,335,056	-		GFF4405	0.21	-0.1
1,335,056	-		GFF4405	0.21	-0.2
1,335,056	-		GFF4405	0.21	+0.5
1,335,056	-		GFF4405	0.21	-0.3
1,335,056	-		GFF4405	0.21	+0.4
1,335,056	-		GFF4405	0.21	+1.3
1,335,056	-		GFF4405	0.21	-1.3
1,335,056	-		GFF4405	0.21	-0.4
1,335,214	+		GFF4405	0.42	+0.8
1,335,215	-		GFF4405	0.42	-0.5
1,335,215	-		GFF4405	0.42	+0.1
1,335,302	+		GFF4405	0.54	-0.5
1,335,303	-		GFF4405	0.54	-0.1
1,335,303	-		GFF4405	0.54	+0.9
1,335,344	-		GFF4405	0.60	-0.6
1,335,454	+		GFF4405	0.75	-1.2
1,335,454	+		GFF4405	0.75	+0.1
1,335,455	-		GFF4405	0.75	-1.4
1,335,455	-		GFF4405	0.75	+0.0
1,335,557	+		GFF4405	0.88	-0.3
1,335,557	+		GFF4405	0.88	-0.7
1,335,557	+		GFF4405	0.88	-0.7
1,335,558	-		GFF4405	0.89	-0.1
1,335,558	-		GFF4405	0.89	-0.3