Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4156

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
1,073,083	+		GFF4155	0.71	+0.2
1,073,288	+		GFF4155	0.81	+0.9
1,073,289	-		GFF4155	0.81	-0.2
1,073,538	+				+0.2
1,073,538	+				-0.1
1,073,648	-				+0.1
1,073,697	+				+0.2
1,073,740	+				-0.3
1,073,740	+				+0.1
1,073,741	-				-1.1
1,073,741	-				+0.1
1,073,741	-				-0.7
1,073,786	+		GFF4156	0.20	-0.0
1,073,787	-		GFF4156	0.20	+0.1
1,073,803	-		GFF4156	0.28	-0.6
1,073,889	+		GFF4156	0.69	-0.2
1,073,889	+		GFF4156	0.69	-0.6
1,073,889	+		GFF4156	0.69	-0.5
1,073,889	+		GFF4156	0.69	-0.9
1,073,889	+		GFF4156	0.69	-0.2
1,073,890	-		GFF4156	0.70	-0.6
1,073,890	-		GFF4156	0.70	+0.1
1,073,890	-		GFF4156	0.70	-0.8
1,073,890	-		GFF4156	0.70	-0.0
1,073,890	-		GFF4156	0.70	+0.9
1,073,890	-		GFF4156	0.70	-0.2
1,073,890	-		GFF4156	0.70	-0.8
1,073,890	-		GFF4156	0.70	-0.1
1,073,952	-				-0.8
1,074,181	+				+0.9
1,074,181	+				+0.2
1,074,181	+				-0.1
1,074,181	+				-0.8
1,074,181	+				+0.7
1,074,181	+				+0.1
1,074,181	+				+0.7
1,074,182	-				+0.4
1,074,187	+				+0.8
1,074,188	-				+0.1
1,074,255	+				-0.5
1,074,256	-				-0.1
1,074,256	-				+0.4
1,074,256	-				+0.5
1,074,299	-				-0.3
1,074,718	-				+0.4
1,074,718	-				-0.1
1,074,718	-				-0.7
1,074,718	-				+0.1
1,074,907	+		GFF4157	0.62	+0.8
1,074,907	+		GFF4157	0.62	-1.2
1,074,908	-		GFF4157	0.62	-0.4
1,074,952	+		GFF4157	0.76	+1.5
1,074,952	+		GFF4157	0.76	+1.5
1,074,952	+		GFF4157	0.76	+0.3
1,074,953	-		GFF4157	0.77	+0.3