Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3999 and GFF4000 are separated by 1 nucleotides GFF4000 and GFF4001 overlap by 4 nucleotides GFF4001 and GFF4002 are separated by 16 nucleotides GFF4002 and GFF4003 are separated by 113 nucleotides
GFF3999 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 915,385 to 916,431
GFF3999
GFF4000 - Cobalamin synthase, at 916,433 to 917,245
GFF4000
GFF4001 - Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73), at 917,242 to 917,796
GFF4001
GFF4002 - Periplasmic binding protein-related protein, at 917,813 to 918,625
GFF4002
GFF4003 - Endonuclease III (EC 4.2.99.18), at 918,739 to 919,377
GFF4003
Position (kb) 917
918 Strain fitness (log2 ratio) -1
0
1 at 916.796 kb on + strand, within GFF4000 at 916.796 kb on + strand, within GFF4000 at 916.797 kb on - strand, within GFF4000 at 916.797 kb on - strand, within GFF4000 at 916.797 kb on - strand, within GFF4000 at 917.207 kb on + strand at 917.208 kb on - strand at 917.296 kb on + strand at 917.608 kb on + strand, within GFF4001 at 917.609 kb on - strand, within GFF4001 at 917.995 kb on - strand, within GFF4002 at 917.995 kb on - strand, within GFF4002 at 918.063 kb on + strand, within GFF4002 at 918.064 kb on - strand, within GFF4002 at 918.105 kb on + strand, within GFF4002 at 918.105 kb on + strand, within GFF4002 at 918.105 kb on + strand, within GFF4002 at 918.105 kb on + strand, within GFF4002 at 918.204 kb on + strand, within GFF4002 at 918.204 kb on + strand, within GFF4002 at 918.204 kb on + strand, within GFF4002 at 918.204 kb on + strand, within GFF4002 at 918.204 kb on + strand, within GFF4002 at 918.204 kb on + strand, within GFF4002 at 918.205 kb on - strand, within GFF4002 at 918.205 kb on - strand, within GFF4002 at 918.321 kb on + strand, within GFF4002 at 918.322 kb on - strand, within GFF4002 at 918.322 kb on - strand, within GFF4002 at 918.333 kb on + strand, within GFF4002 at 918.333 kb on + strand, within GFF4002 at 918.334 kb on - strand, within GFF4002 at 918.492 kb on + strand, within GFF4002 at 918.492 kb on + strand, within GFF4002 at 918.658 kb on + strand at 918.659 kb on - strand at 918.659 kb on - strand at 918.659 kb on - strand at 918.659 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 916,796 + GFF4000 0.45 +0.7 916,796 + GFF4000 0.45 -1.3 916,797 - GFF4000 0.45 +0.5 916,797 - GFF4000 0.45 -0.7 916,797 - GFF4000 0.45 +0.5 917,207 + +0.8 917,208 - -0.1 917,296 + +0.9 917,608 + GFF4001 0.66 -0.9 917,609 - GFF4001 0.66 -1.7 917,995 - GFF4002 0.22 +0.3 917,995 - GFF4002 0.22 -0.3 918,063 + GFF4002 0.31 -0.1 918,064 - GFF4002 0.31 -0.8 918,105 + GFF4002 0.36 +0.2 918,105 + GFF4002 0.36 -0.5 918,105 + GFF4002 0.36 +0.1 918,105 + GFF4002 0.36 +0.1 918,204 + GFF4002 0.48 +0.2 918,204 + GFF4002 0.48 +0.2 918,204 + GFF4002 0.48 -1.4 918,204 + GFF4002 0.48 +0.5 918,204 + GFF4002 0.48 -1.1 918,204 + GFF4002 0.48 -0.1 918,205 - GFF4002 0.48 +0.5 918,205 - GFF4002 0.48 +0.1 918,321 + GFF4002 0.62 +0.0 918,322 - GFF4002 0.63 +0.6 918,322 - GFF4002 0.63 +0.7 918,333 + GFF4002 0.64 -0.2 918,333 + GFF4002 0.64 +0.2 918,334 - GFF4002 0.64 +0.9 918,492 + GFF4002 0.84 +0.9 918,492 + GFF4002 0.84 +0.6 918,658 + +0.4 918,659 - -0.3 918,659 - -0.5 918,659 - -0.1 918,659 - +0.5
Or see this region's nucleotide sequence