Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3879 and GFF3880 are separated by 98 nucleotides GFF3880 and GFF3881 are separated by 167 nucleotides
GFF3879 - 5-nucleotidase SurE (EC 3.1.3.5), at 793,702 to 794,481
GFF3879
GFF3880 - Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77), at 794,580 to 795,347
GFF3880
GFF3881 - Lipoprotein NlpD, at 795,515 to 796,339
GFF3881
Position (kb) 794
795
796 Strain fitness (log2 ratio) -2
-1
0
1 at 793.615 kb on + strand at 793.689 kb on + strand at 793.690 kb on - strand at 793.709 kb on + strand at 793.709 kb on + strand at 793.759 kb on + strand at 793.855 kb on + strand, within GFF3879 at 793.855 kb on + strand, within GFF3879 at 793.855 kb on + strand, within GFF3879 at 793.856 kb on - strand, within GFF3879 at 793.856 kb on - strand, within GFF3879 at 793.856 kb on - strand, within GFF3879 at 793.885 kb on + strand, within GFF3879 at 794.005 kb on + strand, within GFF3879 at 794.006 kb on - strand, within GFF3879 at 794.006 kb on - strand, within GFF3879 at 794.006 kb on - strand, within GFF3879 at 794.038 kb on + strand, within GFF3879 at 794.039 kb on - strand, within GFF3879 at 794.305 kb on + strand, within GFF3879 at 794.305 kb on + strand, within GFF3879 at 794.306 kb on - strand, within GFF3879 at 794.306 kb on - strand, within GFF3879 at 794.306 kb on - strand, within GFF3879 at 794.306 kb on - strand, within GFF3879 at 794.306 kb on - strand, within GFF3879 at 794.306 kb on - strand, within GFF3879 at 794.306 kb on - strand, within GFF3879 at 794.378 kb on - strand, within GFF3879 at 794.841 kb on + strand, within GFF3880 at 794.841 kb on + strand, within GFF3880 at 794.842 kb on - strand, within GFF3880 at 794.842 kb on - strand, within GFF3880 at 794.842 kb on - strand, within GFF3880 at 794.842 kb on - strand, within GFF3880 at 795.018 kb on + strand, within GFF3880 at 795.018 kb on + strand, within GFF3880 at 795.019 kb on - strand, within GFF3880 at 795.019 kb on - strand, within GFF3880 at 795.124 kb on + strand, within GFF3880 at 795.142 kb on - strand, within GFF3880 at 795.329 kb on - strand at 795.668 kb on + strand, within GFF3881 at 795.668 kb on + strand, within GFF3881 at 795.669 kb on - strand, within GFF3881 at 795.671 kb on + strand, within GFF3881 at 795.671 kb on + strand, within GFF3881 at 795.671 kb on + strand, within GFF3881 at 795.671 kb on + strand, within GFF3881 at 795.672 kb on - strand, within GFF3881 at 795.672 kb on - strand, within GFF3881 at 796.103 kb on + strand, within GFF3881 at 796.104 kb on - strand, within GFF3881 at 796.104 kb on - strand, within GFF3881 at 796.163 kb on + strand, within GFF3881 at 796.163 kb on + strand, within GFF3881 at 796.164 kb on - strand, within GFF3881 at 796.175 kb on + strand, within GFF3881
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 793,615 + +0.6 793,689 + +0.1 793,690 - +0.4 793,709 + -1.3 793,709 + -0.4 793,759 + -1.8 793,855 + GFF3879 0.20 -1.3 793,855 + GFF3879 0.20 +1.5 793,855 + GFF3879 0.20 -0.5 793,856 - GFF3879 0.20 -0.4 793,856 - GFF3879 0.20 +0.0 793,856 - GFF3879 0.20 -1.6 793,885 + GFF3879 0.23 -0.4 794,005 + GFF3879 0.39 -1.7 794,006 - GFF3879 0.39 -0.8 794,006 - GFF3879 0.39 -0.8 794,006 - GFF3879 0.39 -1.1 794,038 + GFF3879 0.43 -0.2 794,039 - GFF3879 0.43 -0.3 794,305 + GFF3879 0.77 -0.8 794,305 + GFF3879 0.77 -0.4 794,306 - GFF3879 0.77 +0.3 794,306 - GFF3879 0.77 -2.4 794,306 - GFF3879 0.77 -0.1 794,306 - GFF3879 0.77 -0.7 794,306 - GFF3879 0.77 -1.3 794,306 - GFF3879 0.77 -0.9 794,306 - GFF3879 0.77 -1.9 794,378 - GFF3879 0.87 +0.5 794,841 + GFF3880 0.34 -1.4 794,841 + GFF3880 0.34 -0.7 794,842 - GFF3880 0.34 -2.2 794,842 - GFF3880 0.34 -2.0 794,842 - GFF3880 0.34 -2.4 794,842 - GFF3880 0.34 +0.3 795,018 + GFF3880 0.57 -2.0 795,018 + GFF3880 0.57 -1.1 795,019 - GFF3880 0.57 -0.9 795,019 - GFF3880 0.57 -1.4 795,124 + GFF3880 0.71 -1.5 795,142 - GFF3880 0.73 -2.3 795,329 - -0.2 795,668 + GFF3881 0.19 -1.0 795,668 + GFF3881 0.19 +0.9 795,669 - GFF3881 0.19 -2.0 795,671 + GFF3881 0.19 -1.2 795,671 + GFF3881 0.19 -0.9 795,671 + GFF3881 0.19 -1.4 795,671 + GFF3881 0.19 -2.4 795,672 - GFF3881 0.19 -1.9 795,672 - GFF3881 0.19 -0.1 796,103 + GFF3881 0.71 -1.5 796,104 - GFF3881 0.71 -1.1 796,104 - GFF3881 0.71 -1.3 796,163 + GFF3881 0.79 +0.5 796,163 + GFF3881 0.79 -1.6 796,164 - GFF3881 0.79 -1.1 796,175 + GFF3881 0.80 -1.3
Or see this region's nucleotide sequence