Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3803 and GFF3804 are separated by 1 nucleotides GFF3804 and GFF3805 are separated by 4 nucleotides GFF3805 and GFF3806 are separated by 89 nucleotides
GFF3803 - 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase, at 702,099 to 703,058
GFF3803
GFF3804 - Chromosome segregation ATPases-like protein, at 703,060 to 703,734
GFF3804
GFF3805 - Mll7338 protein, at 703,739 to 704,563
GFF3805
GFF3806 - S-adenosylmethionine:2-demethylmenaquinone methyltransferase (EC 2.1.-.-), at 704,653 to 705,618
GFF3806
Position (kb) 703
704
705 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 702.819 kb on + strand, within GFF3803 at 702.820 kb on - strand, within GFF3803 at 702.820 kb on - strand, within GFF3803 at 702.820 kb on - strand, within GFF3803 at 702.820 kb on - strand, within GFF3803 at 702.849 kb on + strand, within GFF3803 at 702.849 kb on + strand, within GFF3803 at 702.850 kb on - strand, within GFF3803 at 702.850 kb on - strand, within GFF3803 at 702.850 kb on - strand, within GFF3803 at 702.850 kb on - strand, within GFF3803 at 702.862 kb on - strand, within GFF3803 at 703.014 kb on + strand at 703.105 kb on + strand at 703.105 kb on + strand at 703.105 kb on + strand at 703.106 kb on - strand at 703.106 kb on - strand at 703.106 kb on - strand at 703.106 kb on - strand at 703.106 kb on - strand at 703.106 kb on - strand at 703.106 kb on - strand at 703.199 kb on - strand, within GFF3804 at 703.255 kb on + strand, within GFF3804 at 703.381 kb on + strand, within GFF3804 at 703.382 kb on - strand, within GFF3804 at 703.441 kb on + strand, within GFF3804 at 703.624 kb on + strand, within GFF3804 at 703.625 kb on - strand, within GFF3804 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.869 kb on + strand, within GFF3805 at 703.870 kb on - strand, within GFF3805 at 703.870 kb on - strand, within GFF3805 at 703.894 kb on - strand, within GFF3805 at 703.920 kb on + strand, within GFF3805 at 703.920 kb on + strand, within GFF3805 at 703.920 kb on + strand, within GFF3805 at 703.921 kb on - strand, within GFF3805 at 703.921 kb on - strand, within GFF3805 at 703.921 kb on - strand, within GFF3805 at 703.950 kb on + strand, within GFF3805 at 704.334 kb on + strand, within GFF3805 at 704.334 kb on + strand, within GFF3805 at 704.334 kb on + strand, within GFF3805 at 704.335 kb on - strand, within GFF3805 at 704.340 kb on + strand, within GFF3805 at 704.340 kb on + strand, within GFF3805 at 704.341 kb on - strand, within GFF3805 at 704.355 kb on + strand, within GFF3805 at 704.356 kb on - strand, within GFF3805 at 704.362 kb on - strand, within GFF3805 at 704.541 kb on + strand at 704.541 kb on + strand at 704.541 kb on + strand at 704.542 kb on - strand at 704.542 kb on - strand at 704.544 kb on + strand at 704.544 kb on + strand at 704.545 kb on - strand at 704.621 kb on + strand at 704.622 kb on - strand at 704.896 kb on + strand, within GFF3806 at 705.016 kb on + strand, within GFF3806 at 705.176 kb on - strand, within GFF3806 at 705.187 kb on + strand, within GFF3806 at 705.187 kb on + strand, within GFF3806 at 705.188 kb on - strand, within GFF3806 at 705.188 kb on - strand, within GFF3806 at 705.188 kb on - strand, within GFF3806 at 705.436 kb on + strand, within GFF3806 at 705.436 kb on + strand, within GFF3806 at 705.437 kb on - strand, within GFF3806 at 705.437 kb on - strand, within GFF3806 at 705.437 kb on - strand, within GFF3806
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 702,819 + GFF3803 0.75 -0.7 702,820 - GFF3803 0.75 -3.5 702,820 - GFF3803 0.75 -2.1 702,820 - GFF3803 0.75 -3.8 702,820 - GFF3803 0.75 -4.5 702,849 + GFF3803 0.78 -1.7 702,849 + GFF3803 0.78 -2.4 702,850 - GFF3803 0.78 -1.1 702,850 - GFF3803 0.78 -1.4 702,850 - GFF3803 0.78 -1.1 702,850 - GFF3803 0.78 -1.5 702,862 - GFF3803 0.79 -2.7 703,014 + -1.1 703,105 + -1.2 703,105 + -0.1 703,105 + +0.2 703,106 - +0.2 703,106 - +0.1 703,106 - -0.1 703,106 - -1.1 703,106 - -1.4 703,106 - -2.2 703,106 - +0.4 703,199 - GFF3804 0.21 +0.3 703,255 + GFF3804 0.29 -1.2 703,381 + GFF3804 0.48 -0.1 703,382 - GFF3804 0.48 -0.1 703,441 + GFF3804 0.56 +0.6 703,624 + GFF3804 0.84 +0.2 703,625 - GFF3804 0.84 +0.3 703,833 + GFF3805 0.11 -0.1 703,833 + GFF3805 0.11 +0.4 703,833 + GFF3805 0.11 +0.3 703,833 + GFF3805 0.11 -0.7 703,833 + GFF3805 0.11 -0.1 703,833 + GFF3805 0.11 -1.4 703,833 + GFF3805 0.11 -1.9 703,833 + GFF3805 0.11 -0.5 703,833 + GFF3805 0.11 -0.6 703,834 - GFF3805 0.12 -1.1 703,834 - GFF3805 0.12 -1.5 703,834 - GFF3805 0.12 +0.7 703,834 - GFF3805 0.12 +1.8 703,834 - GFF3805 0.12 -0.4 703,834 - GFF3805 0.12 +0.2 703,834 - GFF3805 0.12 +0.3 703,834 - GFF3805 0.12 -0.9 703,834 - GFF3805 0.12 +0.0 703,869 + GFF3805 0.16 -0.1 703,870 - GFF3805 0.16 -0.4 703,870 - GFF3805 0.16 -0.3 703,894 - GFF3805 0.19 -0.0 703,920 + GFF3805 0.22 -0.4 703,920 + GFF3805 0.22 +0.3 703,920 + GFF3805 0.22 -0.2 703,921 - GFF3805 0.22 -0.2 703,921 - GFF3805 0.22 -1.1 703,921 - GFF3805 0.22 -0.1 703,950 + GFF3805 0.26 -0.3 704,334 + GFF3805 0.72 +0.5 704,334 + GFF3805 0.72 -0.5 704,334 + GFF3805 0.72 -0.3 704,335 - GFF3805 0.72 -1.4 704,340 + GFF3805 0.73 -0.2 704,340 + GFF3805 0.73 +1.1 704,341 - GFF3805 0.73 -1.1 704,355 + GFF3805 0.75 +0.9 704,356 - GFF3805 0.75 +0.5 704,362 - GFF3805 0.76 -1.1 704,541 + +0.1 704,541 + -0.2 704,541 + -0.5 704,542 - -0.7 704,542 - +0.2 704,544 + -0.1 704,544 + -0.0 704,545 - +0.5 704,621 + +0.4 704,622 - -0.4 704,896 + GFF3806 0.25 -0.1 705,016 + GFF3806 0.38 -0.1 705,176 - GFF3806 0.54 -0.2 705,187 + GFF3806 0.55 +0.4 705,187 + GFF3806 0.55 +0.3 705,188 - GFF3806 0.55 +0.9 705,188 - GFF3806 0.55 +0.5 705,188 - GFF3806 0.55 -0.7 705,436 + GFF3806 0.81 +0.2 705,436 + GFF3806 0.81 +1.0 705,437 - GFF3806 0.81 -0.5 705,437 - GFF3806 0.81 -0.0 705,437 - GFF3806 0.81 +0.2
Or see this region's nucleotide sequence