Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3799 and GFF3800 are separated by 9 nucleotides GFF3800 and GFF3801 are separated by 2 nucleotides GFF3801 and GFF3802 are separated by 1 nucleotides GFF3802 and GFF3803 are separated by 1 nucleotides
GFF3799 - 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.17), at 699,176 to 699,859
GFF3799
GFF3800 - 2-pyrone-4,6-dicarboxylic acid hydrolase, at 699,869 to 700,801
GFF3800
GFF3801 - Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8), at 700,804 to 701,229
GFF3801
GFF3802 - Protocatechuate 4,5-dioxygenase beta chain (EC 1.13.11.8), at 701,231 to 702,097
GFF3802
GFF3803 - 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase, at 702,099 to 703,058
GFF3803
Position (kb) 700
701
702 Strain fitness (log2 ratio) -2
-1
0
1
2 at 699.810 kb on - strand at 699.810 kb on - strand at 699.810 kb on - strand at 699.848 kb on + strand at 699.848 kb on + strand at 699.849 kb on - strand at 699.849 kb on - strand at 699.849 kb on - strand at 699.849 kb on - strand at 699.849 kb on - strand at 700.032 kb on - strand, within GFF3800 at 700.032 kb on - strand, within GFF3800 at 700.064 kb on + strand, within GFF3800 at 700.355 kb on + strand, within GFF3800 at 700.356 kb on - strand, within GFF3800 at 700.356 kb on - strand, within GFF3800 at 701.041 kb on + strand, within GFF3801 at 701.041 kb on + strand, within GFF3801 at 701.041 kb on + strand, within GFF3801 at 701.042 kb on - strand, within GFF3801 at 701.042 kb on - strand, within GFF3801 at 701.042 kb on - strand, within GFF3801 at 701.255 kb on + strand at 701.256 kb on - strand at 701.256 kb on - strand at 701.315 kb on + strand at 701.315 kb on + strand at 701.340 kb on - strand, within GFF3802 at 701.397 kb on - strand, within GFF3802 at 701.465 kb on + strand, within GFF3802 at 701.465 kb on + strand, within GFF3802 at 701.732 kb on + strand, within GFF3802 at 701.732 kb on + strand, within GFF3802 at 701.732 kb on + strand, within GFF3802 at 701.733 kb on - strand, within GFF3802 at 701.733 kb on - strand, within GFF3802 at 701.733 kb on - strand, within GFF3802 at 701.733 kb on - strand, within GFF3802 at 701.733 kb on - strand, within GFF3802 at 701.733 kb on - strand, within GFF3802 at 701.771 kb on + strand, within GFF3802 at 701.771 kb on + strand, within GFF3802 at 701.772 kb on - strand, within GFF3802 at 701.930 kb on + strand, within GFF3802 at 701.930 kb on + strand, within GFF3802 at 701.931 kb on - strand, within GFF3802 at 702.041 kb on + strand at 702.041 kb on + strand at 702.041 kb on + strand at 702.042 kb on - strand at 702.042 kb on - strand at 702.098 kb on + strand at 702.099 kb on - strand at 702.099 kb on - strand at 702.099 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 699,810 - -0.6 699,810 - -0.6 699,810 - -0.7 699,848 + -0.5 699,848 + -2.3 699,849 - -0.6 699,849 - -0.7 699,849 - -0.6 699,849 - -0.2 699,849 - -1.2 700,032 - GFF3800 0.17 -1.9 700,032 - GFF3800 0.17 -0.3 700,064 + GFF3800 0.21 -1.0 700,355 + GFF3800 0.52 -1.4 700,356 - GFF3800 0.52 -0.7 700,356 - GFF3800 0.52 -1.2 701,041 + GFF3801 0.56 -0.5 701,041 + GFF3801 0.56 -0.5 701,041 + GFF3801 0.56 -1.5 701,042 - GFF3801 0.56 -0.1 701,042 - GFF3801 0.56 +0.1 701,042 - GFF3801 0.56 -0.4 701,255 + -0.3 701,256 - -1.1 701,256 - -0.7 701,315 + +1.5 701,315 + -0.8 701,340 - GFF3802 0.13 -0.8 701,397 - GFF3802 0.19 -0.6 701,465 + GFF3802 0.27 -0.8 701,465 + GFF3802 0.27 +2.7 701,732 + GFF3802 0.58 +0.3 701,732 + GFF3802 0.58 -0.8 701,732 + GFF3802 0.58 +0.1 701,733 - GFF3802 0.58 +0.4 701,733 - GFF3802 0.58 +1.8 701,733 - GFF3802 0.58 +0.1 701,733 - GFF3802 0.58 +0.3 701,733 - GFF3802 0.58 +0.4 701,733 - GFF3802 0.58 +0.4 701,771 + GFF3802 0.62 -1.2 701,771 + GFF3802 0.62 +0.2 701,772 - GFF3802 0.62 +0.1 701,930 + GFF3802 0.81 -0.1 701,930 + GFF3802 0.81 +0.4 701,931 - GFF3802 0.81 +0.3 702,041 + -1.1 702,041 + -0.5 702,041 + -0.0 702,042 - -0.8 702,042 - +0.2 702,098 + -0.1 702,099 - -1.0 702,099 - +0.1 702,099 - -0.4
Or see this region's nucleotide sequence